Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05063 ATGAGTTCTAAAAAGATTACATGGAAGTCTATTGTCTTGATCTTAGGTTGTTACAAGACAAAATGTTCTTTGGAAGAAACAGAAAAACGAGGTTTAAAACAAGGTTCTTTCCAAAGGGTATCTTTGTCTGATATAAGTAATTCTAGTTCTAGTCAAGCTATTGAAGATATTTCAATTTCTTTTGCTGGCTCAAAGCTTTACACATTCACTTTAGAGGAGCTAAAAGAAGCAACAAATAATTTCTCAAGGAGTAATTTGTTAGGTGAAGGTGGATTTGGACCTGTGTATAAGGGTTTTGTTGATGATAAACTCAGACATGGTTTGAAGGCTCAACCTGTTGCTGTGAAGAGACTCAACTTGGATGGCTCACAAGGTCATAGGGAATGGCTGGCAGAGATTATATTTCTTGGACAGCTTAGACATCCACATCTTGTCAAGCTAGTTGGATATTGTTATGAAGAGGAGCAAAGGCTTTTGGTGTATGAATACATGGCTAGAGGGAGCTTGGAGAATCAATTATTCAGAAGATATTCTGCAACCTTACCATGGTCAACAAGAATGAAAATTGCATTAGGTGCAGCTAAGGGACTAACCTTTCTTCATGAAGCAGATAAACCTGTAATATATAGGGATTTCAAAAGTTCAAATATATTGCTGGATTCGGATTACACTGCTAAACTATCAGACCTTGGACTAGCTAAAGATGGTCCTGAAGGAGAAGAAACACATGTGACAACAACATGTATAATGGGAACTAAAGGCTATGCTGCTCCTGAGTATATCATGTCAGGTCACCTTTCTACAAAGAGTGATGTGTATAGCTATGGAGTAGTGTTATTGGAATTGCTTACAGGAAAAAGAGTAGTGGACAAAAGCAGAACAAGCAGAGAGAGACACCTTGTGGAATGGGCAAGACCTATTTTGAGAGATCAAAGAAAGCTTCCTCATATAATAGACTCAAGATTAGAGGGACAGTTTCCTATTAAAGGAGCTTTAAAGGTTGCAGCATTGACTTATAAATGCTTGAGCCACCACCCTACTCCAAGGCCTAATATGAGTGATGTGGTAAATACATTGGAATCACTTCAGGATTTTGATGATGTGTTCATAGGACCATTTGTGTATGTGGCTGTTAGTGAAATTGACCAATGA 1152 0.3793 MSSKKITWKSIVLILGCYKTKCSLEETEKRGLKQGSFQRVSLSDISNSSSSQAIEDISISFAGSKLYTFTLEELKEATNNFSRSNLLGEGGFGPVYKGFVDDKLRHGLKAQPVAVKRLNLDGSQGHREWLAEIIFLGQLRHPHLVKLVGYCYEEEQRLLVYEYMARGSLENQLFRRYSATLPWSTRMKIALGAAKGLTFLHEADKPVIYRDFKSSNILLDSDYTAKLSDLGLAKDGPEGEETHVTTTCIMGTKGYAAPEYIMSGHLSTKSDVYSYGVVLLELLTGKRVVDKSRTSRERHLVEWARPILRDQRKLPHIIDSRLEGQFPIKGALKVAALTYKCLSHHPTPRPNMSDVVNTLESLQDFDDVFIGPFVYVAVSEIDQ 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05063 383 Pfam Protein tyrosine and serine/threonine kinase 84 359 IPR001245 GO:0004672|GO:0006468
Trre5g05063 383 Gene3D Transferase(Phosphotransferase) domain 1 164 369 - -
Trre5g05063 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Trre5g05063 383 FunFam Serine/threonine-protein kinase BIK1 47 163 - -
Trre5g05063 383 ProSiteProfiles Protein kinase domain profile. 81 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05063 383 SUPERFAMILY Protein kinase-like (PK-like) 57 361 IPR011009 -
Trre5g05063 383 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 164 368 - -
Trre5g05063 383 PANTHER OS01G0588500 PROTEIN-RELATED 47 363 - -
Trre5g05063 383 Gene3D Phosphorylase Kinase; domain 1 40 163 - -
Trre5g05063 383 CDD STKc_IRAK 87 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05063 Trre-Chr5 52024711 52027136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05063 68 359 Glycoside Hydrolase AT3G07070 51.864 3.16e-100 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre5g05063 PK_Tyr_Ser-Thr 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05063 - - gmx:100805771 632.098