Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05057 ATGAGTCTCCGCAAGGGCTCCAAGGTTTGGGTCCCTGATAGGGATTTCGCTTGGCTTCCTGCTGAAGTTCTCGAATCTTCTGATAAGCAAGTTCGCGTTCAAACCGATTCCGTCAATAAACAGATTGTTGTTGTTACTCCGGAGAAAATATTTCCGAGAGATGCCGATGAAGATGAGCACGGTGGAGTTGAAGATATGACGAGATTGGCTTATTTGAATGAACCAGGGGTGTTGTACAATATTCGGAGAAGATATGCGCTTAATGATATTTATACATATACAGGGAGCATTTTGATAGCTGTTAATCCATTCACAAAGCTTCCTCATTTGTACAATAACCATATGATGGAGCAGTATAAGGGAGCACCATTTGGAGAGCTCAGTCCACATGTATTCGCCGTTGCCGATGCATCGTATAGAGCAATGATGAATGAAGGTCGAAGCCAATCTATCTTGGTCAGTGGTGAAAGTGGTGCAGGGAAAACTGAGACAACAAAATTGATTATGCAGTATCTTACCTTTGTTGGTGGGCGTGCTGTTTCTGATGATAGAACAGTTGAACAACAAGTTCTTGAATCAAATCCACTTTTAGAGGCATTTGGCAATGCAAGGACTTCCAGAAATGACAATTCAAGCCGTTTTGGGAAGTTCGTTGAAATTCAGTTTGATTCAAGTGGTAAAATATCTGGCGCTGCAATTAGAACTTACTTATTGGAAAGATCACGAGTAGTGCAGACCACGGATCCTGAAAGAAATTATCACTGCTTTTACCAGTTGTGTGCATCTGAAAGGGATGTAGAAAAGTACAAGTTAGGACATCCAAGTCACTTCCACTATTTGAATCAAAGTAAAGTTTATGAATTAGACGGGGTAAGCAGTGCAGAAGAATACATAAAGACGAGAAGAGCAATGAATATTGTTGGCATAAGTCATGAGGATCAGGAAGCCATATTTCGCACCTTAGCTGCAATTTTACATCTAGGAAATGTTGAATTTTCTCCTGGGAAAGAGCATGACTCGTCAATAATAAAGGATGAGAAATCAACATTTCATTTGCAGATGGCGGCTAATCTTTTCAAGTGTGATCTGAACCTACTACGAGCAACATTATGTACTCGTACAATACAAACCCGCGAAGGAAATATTGTCAAAGCTCTTGATTGCAATGAGGCTGTTGCTGGCAGGGATGTTTTGGCAAAAACCGTCTATGCTCGTTTGTTTGATTGGCTTGTTGATAAGATCAATAAAACGGTTGGGCAAGATATCAATTCCAGGATGCAAATTGGAATATTGGATATATATGGCTTTGAGTCTTTTAAGGATAACAGTTTTGAGCAATTCTGCATCAATTTTGCAAATGAAAAGCTTCAACAACATTTTAATGAGCATGTATTCAAGATGGAGCAAGAGGAGTATAAAAAAGAAGAAATTGAGTGGAGTTACATTGAATTTATAGATAACCAAGATGTTTTAGATTTGATTGAAAAGAAGCCCATTGGTATCATTGCCCTGTTAGATGAAGCATGCATGTTTCCAAAATCGACGCACCAAACATTCTCAACCAAGTTGTTTCAGCACTTCTTATCCCACACTAGGTTTGGAAAGGAGAAGTTTTCAGAAACAGATTTTACTGTTTCTCATTATGCTGGAAAGGTCACATACCATACAAACACATTTTTAGACAAAAATCGTGATTATGTAGTTCTAGAGCATTGTAATGTGTTATCTTCTTCAAAATGCCCCTTTGTGAAGGGCCTTTTTCCTTCTTTACCAGAGGAATCTTCAAGGTCATCCTACAAGTTTTCATCCGTGGCTTCCAGATTTAAGCAACAACTTCAAGCACTTATGGAAACACTGAAGACAACAGAGCCTCACTACATTCGATGCGTCAAGCCAAATTCTTCGAATCTACCACAAAAGTTTGAGAATACAAGTGTCTTGCATCAATTACGTTGCGGGGGTGTACTTGAGGCTGTTCGGATAAGTCTGGCAGGTTATCCAACTCGAAGGACTTACTCGGAGTTTGTATATCGCTTTGGATTAATAGCTCCTGAATTTATGGATGGAAGTTATGATGATAGAGCTACAACTCAGAAAATTTTGCAAAAGCTAAAGCTTGAGAATTTTCAGCTTGGTAGGACTAAAGTGTTTCTCCGGGCTGGTCAAATTGGTGTTTTAGACTCTAGGCGGGCTGAAGTTTTGGACAATGCTGCAAAGTGTATTCAGTGTCGACTGCGTACATTTATAGCACACCGGGATTTCATCTCAATCCGAGCTGCTGCAGTTTCTCTTCAAGCATGCTGCAGGGGATGCTTAGCACGGAACATATATGCTTCTAAACGGGAGACTGCAGCAGCTATCTCCATTCAGAAATATATTCGTATGTGTCTTATAAGGCGTGCTTACACGGCATTGTATTCTTCTGCTATCATCATACAATCAAATGTTCGTGGTTTCACAATTCGCCAAAGATTCTTGCATAGAAAAGAACACAAAGCTGCAACTATTATTCAGGCTTATTGGAAGATGTGCAAGGTTCGGTCTACTTTCAAAAAACATCGATTTTTAATCGTGGCAATACAATGCCTTTGGCGCTGTAAACAAGCAAAAAGACAGCTTCGCAGACTTAAACAAGAGGCTAGGGAAACTGGTGCCTTGCGTTTAGCTAAGACTAACCTTGAGAAACAATTGGAAGAGCTCACATGGCGTTTGCATCTTGAAAAAAAAATAAGGGTGTCTAATGAAGAGGCTAAGCAAGTTGAGATTGCCAAACTTCAGAAGATGTTGGAAGCTCAGAATTGTGAATTAGATGAAGCTAAATTGGCAGCAATTAATGAGTTGAATAAGAATGCAATTTTGCAAAATCAGTTGCAGTTATCAGCTAAGGAAAAATCTGCTTTAGAAAGAGAGCTAGTTGCAATGAATGAAGTGCGGAAGGAAAATGCTCTTTTGAAGGGTTCTTTGGATGCATTGGAAAAGAAGAGCACGGCTTTGGAGCTTGAGCTTGTGAATGCTCAAAAAGACCATAGTGAAACCATTCAGAAAATGAAGGAGTTTGAACAGAAGAGTTCTCAACTGGCACAAAATTTGAAAAGTCTTGAGGAAAAGCTTTTGAGTTTGGAGAATGAAAATCAAGTCCTTCGTCAGAAAGCCTTAACTGTATCTCCGAAGAGTAATCGTCCAGGTTTTGCAAAGTCGTCATTAGAAAAACACTCAAGTGCAATAGTCCCCCACACTGAGCAAAACCCAGCATTTGAATCACCCACACCCACAAAACTTATTTCCTCCTTTACACGTGGCTTGTCAGATTCTCGTCGGTCTAAATTAACAGCAGAAAAGCACCAGGATAACTACGAATTCCTCACTAGGTGTATCAAAGAGAATTTGGGGTTCAAAAATGGTAAACCTGTGGCAGCTAGTGTTATATACAAATGTCTTCTCCATTGGCATGCATTTGAATCTGAGCGCACCGCCATATTTGATTACATAATTGATAGAATTAATGATGCCATCAAAGTTACCGACAACGACACTGTCTTGCCATATTGGCTGTCCAATACCTCCGCACTTGTGTGTCTTTTACAGAGAAATGTCCGCTCAAATGGTTTTTTAACTACCACTGGTCAACGTTATGCTGGATCATCTGGCTTGACCACTCGGATGGGGCACGGACTGAAGTCTTCGTTGAAGTTAATTGGATATAATGATGGTATGCCACATGTGGATGCAAGATATCCAGCTATACTTTTTAAACAACAACTAACTGCTTGTGTAGAGAAGATTTTTGGCCTTATACGTGATAATTTGAAAAGGGAACTTTCTCCGCTTCTGGCATTATGTATTCAGGCACCCAAAGCAGGACGAGTGCAAAGTGGGAAATCATCTAGATCTCCTGGGGGACTTCCTCAACAATCACCTGGTGGCCAATGGGACAACATCATCAATTTTTTGAATTCACTCTTGAACCGATTATGTGCAAATCATATACCATCCTTCTTCATCCGCAAGCTAGTTACACAGGTCTTTTCCTTCATCAATATGACTCTGTTCAACAGTCTTCTTTTGCGACGTGAATGTTGTACTTTCTCAAATGGTGAATATGTAAAGTCTGGTCTTGCTGAACTGGAGAAATGGATAGTTAATGCAAATGAAGAGTATGCAGGAACATCCTGGCATGAGCTGAATTATATAAGACAAGCTGTCGGGTTTCTGGTAATACATCAGAAGAGAAAGAAATCTTTGGAAGAAATTAGACAGGATCTTTGTCCGGCATTAACTGTGAGGCAAATCTATCGAATTAGTACTATGTACTGGGATGACAAGTATGGAACCCAAAGTGTGTCCAACGAGGTAGTAGGTGAAATGAGGGAAATTGTGAGCAGAGACAATCATAGTTTGTCCTCAAATTCATTCTTGATGGATGACGACATGAGTATTCCTTTTTCTGCTGAAGACATAGACATGGCGATCCCTGCTGTGGATGCTGATGATATTGAGCTCCCAGCATTCTTGTGTGAATACCCTTGTGCCCAGTTTCTTGTTTCACACGAGTAA 4554 0.4012 MSLRKGSKVWVPDRDFAWLPAEVLESSDKQVRVQTDSVNKQIVVVTPEKIFPRDADEDEHGGVEDMTRLAYLNEPGVLYNIRRRYALNDIYTYTGSILIAVNPFTKLPHLYNNHMMEQYKGAPFGELSPHVFAVADASYRAMMNEGRSQSILVSGESGAGKTETTKLIMQYLTFVGGRAVSDDRTVEQQVLESNPLLEAFGNARTSRNDNSSRFGKFVEIQFDSSGKISGAAIRTYLLERSRVVQTTDPERNYHCFYQLCASERDVEKYKLGHPSHFHYLNQSKVYELDGVSSAEEYIKTRRAMNIVGISHEDQEAIFRTLAAILHLGNVEFSPGKEHDSSIIKDEKSTFHLQMAANLFKCDLNLLRATLCTRTIQTREGNIVKALDCNEAVAGRDVLAKTVYARLFDWLVDKINKTVGQDINSRMQIGILDIYGFESFKDNSFEQFCINFANEKLQQHFNEHVFKMEQEEYKKEEIEWSYIEFIDNQDVLDLIEKKPIGIIALLDEACMFPKSTHQTFSTKLFQHFLSHTRFGKEKFSETDFTVSHYAGKVTYHTNTFLDKNRDYVVLEHCNVLSSSKCPFVKGLFPSLPEESSRSSYKFSSVASRFKQQLQALMETLKTTEPHYIRCVKPNSSNLPQKFENTSVLHQLRCGGVLEAVRISLAGYPTRRTYSEFVYRFGLIAPEFMDGSYDDRATTQKILQKLKLENFQLGRTKVFLRAGQIGVLDSRRAEVLDNAAKCIQCRLRTFIAHRDFISIRAAAVSLQACCRGCLARNIYASKRETAAAISIQKYIRMCLIRRAYTALYSSAIIIQSNVRGFTIRQRFLHRKEHKAATIIQAYWKMCKVRSTFKKHRFLIVAIQCLWRCKQAKRQLRRLKQEARETGALRLAKTNLEKQLEELTWRLHLEKKIRVSNEEAKQVEIAKLQKMLEAQNCELDEAKLAAINELNKNAILQNQLQLSAKEKSALERELVAMNEVRKENALLKGSLDALEKKSTALELELVNAQKDHSETIQKMKEFEQKSSQLAQNLKSLEEKLLSLENENQVLRQKALTVSPKSNRPGFAKSSLEKHSSAIVPHTEQNPAFESPTPTKLISSFTRGLSDSRRSKLTAEKHQDNYEFLTRCIKENLGFKNGKPVAASVIYKCLLHWHAFESERTAIFDYIIDRINDAIKVTDNDTVLPYWLSNTSALVCLLQRNVRSNGFLTTTGQRYAGSSGLTTRMGHGLKSSLKLIGYNDGMPHVDARYPAILFKQQLTACVEKIFGLIRDNLKRELSPLLALCIQAPKAGRVQSGKSSRSPGGLPQQSPGGQWDNIINFLNSLLNRLCANHIPSFFIRKLVTQVFSFINMTLFNSLLLRRECCTFSNGEYVKSGLAELEKWIVNANEEYAGTSWHELNYIRQAVGFLVIHQKRKKSLEEIRQDLCPALTVRQIYRISTMYWDDKYGTQSVSNEVVGEMREIVSRDNHSLSSNSFLMDDDMSIPFSAEDIDMAIPAVDADDIELPAFLCEYPCAQFLVSHE 1517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05057 1517 Gene3D Kinesin motor domain 64 661 IPR036961 -
Trre5g05057 1517 SMART DIL_2 1336 1443 IPR002710 -
Trre5g05057 1517 Coils Coil 950 970 - -
Trre5g05057 1517 Gene3D Myosin VI head, motor domain, U50 subdomain 310 600 - -
Trre5g05057 1517 Coils Coil 915 942 - -
Trre5g05057 1517 Gene3D - 784 831 - -
Trre5g05057 1517 Gene3D - 832 881 - -
Trre5g05057 1517 Gene3D - 733 783 - -
Trre5g05057 1517 ProSiteProfiles IQ motif profile. 805 834 IPR000048 GO:0005515
Trre5g05057 1517 PANTHER MYOSIN 53 1450 - -
Trre5g05057 1517 Gene3D - 251 308 - -
Trre5g05057 1517 SMART MYSc_2a 55 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre5g05057 1517 Gene3D - 437 622 - -
Trre5g05057 1517 ProSiteProfiles Myosin motor domain profile. 61 731 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre5g05057 1517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 781 882 IPR027417 -
Trre5g05057 1517 ProSiteProfiles IQ motif profile. 757 786 IPR000048 GO:0005515
Trre5g05057 1517 CDD MyosinXI_CBD 1112 1484 IPR037975 GO:0007015
Trre5g05057 1517 PRINTS Myosin heavy chain signature 480 508 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre5g05057 1517 PRINTS Myosin heavy chain signature 91 110 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre5g05057 1517 PRINTS Myosin heavy chain signature 148 173 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre5g05057 1517 PRINTS Myosin heavy chain signature 427 455 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre5g05057 1517 PRINTS Myosin heavy chain signature 195 222 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre5g05057 1517 ProSiteProfiles IQ motif profile. 782 808 IPR000048 GO:0005515
Trre5g05057 1517 ProSiteProfiles IQ motif profile. 853 882 IPR000048 GO:0005515
Trre5g05057 1517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 779 IPR027417 -
Trre5g05057 1517 Pfam DIL domain 1337 1440 IPR002710 -
Trre5g05057 1517 Coils Coil 974 1050 - -
Trre5g05057 1517 CDD MYSc_Myo11 75 719 IPR036018 -
Trre5g05057 1517 Gene3D - 665 732 - -
Trre5g05057 1517 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 4 55 IPR004009 GO:0003774|GO:0005524|GO:0016459
Trre5g05057 1517 FunFam Myosin heavy chain 251 305 - -
Trre5g05057 1517 ProSiteProfiles Dilute domain profile. 1161 1461 IPR002710 -
Trre5g05057 1517 Coils Coil 866 886 - -
Trre5g05057 1517 SMART iq_5 781 803 IPR000048 GO:0005515
Trre5g05057 1517 SMART iq_5 733 755 IPR000048 GO:0005515
Trre5g05057 1517 SMART iq_5 852 874 IPR000048 GO:0005515
Trre5g05057 1517 SMART iq_5 756 778 IPR000048 GO:0005515
Trre5g05057 1517 SMART iq_5 804 826 IPR000048 GO:0005515
Trre5g05057 1517 SMART iq_5 829 851 IPR000048 GO:0005515
Trre5g05057 1517 Pfam Myosin head (motor domain) 63 719 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre5g05057 1517 Pfam IQ calmodulin-binding motif 758 777 IPR000048 GO:0005515
Trre5g05057 1517 Pfam IQ calmodulin-binding motif 807 825 IPR000048 GO:0005515
Trre5g05057 1517 Pfam IQ calmodulin-binding motif 831 851 IPR000048 GO:0005515
Trre5g05057 1517 Pfam IQ calmodulin-binding motif 783 802 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05057 Trre-Chr5 51963300 51991400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05057 1 1514 Myosins gene family AT4G33200 71.485 0.0 2223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05057 K10357 - gmx:100796413 2563.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05057 5 51963300 51991400 Trre5g05057 5 51963300 51991400 ECH
Trre1g00541 1 4030351 4049342 Trre5g05057 5 51963300 51991400 PCT