Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05056 ATGGCAACTCATCTGCTTAAGCTTTCTCTCTTCTCTCCACCTAACCTCTCTTTCAATTTCAATCATGGTCACCACTTCATTTCTCTACTTCCTACAAAACGACGTCGCATCTACCACAGCCGGAAAATTCTCCGCCAAAATTTCTCCGTATCAAACTCCTTCACTACTGAGATTCGCTCACCACAATCACCTCTTCTTCAACTCCTACCACAGACCAAAGACTCGTCGGTTCTTCTCGATGTCACTGGAATGATGTGCGGCGGTTGCGTCTCCCGAGTCAAAAACATTCTATCCTCCGACGACAGAGTAGACTCAGTCGTAGTCAACATGTTGACTGAAACCGCCGCTATTAAGCTTAAACTGCTAGATGAGGAATCAACGAGTGTTGCGGAGAGTCTTGCTCGGAGATTGAGTGAATGCGGGTTTCCGACTAAGAAGAGAGAGTCAGGTTTAGGAGTGGCGGAAAATGTAAGGAAATGGAAGGAATTGGTGAAAAAGAAGGAGGAACTTCTTGCTAAGAGTCGTAACCGCGTTGCTTTTGCTTGGACTTTGGTTGCACTGTGTTGTGGTTCGCATGCTTCGCATATTTTTCATTCTTTGGGGATTCACATTGGTCATGGAACGTTTTGGGAAATTCTTCATAATTCATACTTCAAAGGTGGTTTAGCTTTGGGCTCTCTACTGGGACCAGGAAGAGAGTTACTCTTTGATGGTTTAAATGCTTTTAAGAAAGGGTCGCCAAATATGAACTCTCTCGTGGGATTTGGTTCAATAGCTGCTTTCATCATCAGCTCGATTTCACTACTGAACCCCGAGCTAGAATGGGATGCGTCATTCTTTGATGAACCGGTCATGCTTCTTGGTTTCGTGCTTCTAGGACGTTCTCTGGAAGAAAAGGCAAGGATTCAGGCATCTAGTGATATGAATGAACTTCTTTCCCTAATATCTACTCAGTCAAGACTTGTCATTACATCATCAGAAGGTTCCCCATCTACTGACAGTGTGCTTAGCTCAGACTCAATTTGTGTGGAAGTTCCAACTGATGATATTCGAGTAGGAGACTCAGTGTTGGTGTTGCCTGGAGAAACTATTCCTATAGATGGAAGGGTCATTGCAGGAAGAAGCGTTGTGGACGAATCCATGCTAACAGGAGAATCACTTCCTGTATTTAAGGAGGAAGGCCTCACAGTTTCAGCAGGAACTATAAACTGGGATGGTCCTTTAAGGATTGAATCTTCTTCAACTGGCTCCAACACAATGATATCCAAGATTGTACGCATGGTCGAGGATGCTCAATCGCGTGAAGCACCTGTACAAAGGCTTGCAGATTCAATAGCAGGGCCATTTGTATTTAGTATAATGACTCTGTCAGCAGCAACATTTGCATTTTGGTATTTTATTGGAACACACACATTTCCTGATGTTTTGCTCAATGATATTGCTGGCCCGGAAGGAGATCCTCTGCTTTTGAGTTTAAAACTCTCTGTAGATGTTTTGGTTGTTTCTTGTCCTTGTGCTTTGGGTCTTGCCACACCAACAGCAATCCTAGTTGGCACCTCACTTGGGGCAAGAAAAGGACTTCTTATCAGAGGAGGGGATGTGCTAGAACGCTTGGCCGGTGTAAATTATATTGCTCTAGACAAGACAGGAACCCTTACCAGAGGAAAACCAGTTGTTTCTGCCATAGGCTCTATTCATTATGGAGAGTCGGAAATTCTTCAGATTGCGGCAGCAGTGGAGAAAACTGCATCTCATCCTATAGCGAAGGCTATCATTAATAAAGCTGAGTCATTAGAGTTGGTCCTTCCACTCACAAAAGGACAGATAGTCGAACCAGGTTTTGGAACCTTGGCAGAAGTAGATGGGCGTTTGGTTGCAGTTGGGTCTTTAGACTGGGTTCATGAACGTTTCAAGACTAAAATGAACCCATCAGATTTGATGAATCTTGAACGTTCTTTGATGAATCATTCATCGAGTACATCTTCTTCGAAGTATTCAAAAACTGTTGTCTACGTTGGACGTGAAGGAGAAGGTGTAATTGGTGTTATTGCCATATCTGACATTGTGCGTGAAGATGCTGAATCTACTGTAATGAGGCTCAAGAAGAAGGGGATTAAAACAGTCCTCTTATCAGGAGACAGGGAAGAAGCAGTTGCAACAATAGCAGAGACAGTTGGAATTGAAAATGATTTTGTCAAAGCATCCTTGTCTCCACAACAGAAATCTGCATTTATTTCATCTCTAAAAGCTGCTGGACATCATGTTGCGATGGTAGGTGATGGGATAAATGATGCACCCTCTTTGGCTGCAGCGGATGTTGGGATCGCTTTGCAGAATGAAGCTCAAGAGAATGCTGCCTCAGATGCAGCATCCATCATACTTCTGGGCAACAAAATTTCACAGGTTATTGATGCATTAGACCTAGCACAGGCAACAATGGCAAAAGTTTACCAAAATTTGTCTTGGGCAGTAGCTTACAATGTTGTTGCCGTTCCCATTGCTGCTGGTGTGTTGCTTCCCCAATTTGACTTTGCTATGACACCTTCACTTTCAGGTGGACTAATGGCTATGAGCTCCATTTTGGTGGTTAGCAACTCGCTACTTTTAAAGCTTCATGGGTCTCAGACCTCCGGAAAGGGTTCACTCTAG 2649 0.4371 MATHLLKLSLFSPPNLSFNFNHGHHFISLLPTKRRRIYHSRKILRQNFSVSNSFTTEIRSPQSPLLQLLPQTKDSSVLLDVTGMMCGGCVSRVKNILSSDDRVDSVVVNMLTETAAIKLKLLDEESTSVAESLARRLSECGFPTKKRESGLGVAENVRKWKELVKKKEELLAKSRNRVAFAWTLVALCCGSHASHIFHSLGIHIGHGTFWEILHNSYFKGGLALGSLLGPGRELLFDGLNAFKKGSPNMNSLVGFGSIAAFIISSISLLNPELEWDASFFDEPVMLLGFVLLGRSLEEKARIQASSDMNELLSLISTQSRLVITSSEGSPSTDSVLSSDSICVEVPTDDIRVGDSVLVLPGETIPIDGRVIAGRSVVDESMLTGESLPVFKEEGLTVSAGTINWDGPLRIESSSTGSNTMISKIVRMVEDAQSREAPVQRLADSIAGPFVFSIMTLSAATFAFWYFIGTHTFPDVLLNDIAGPEGDPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGARKGLLIRGGDVLERLAGVNYIALDKTGTLTRGKPVVSAIGSIHYGESEILQIAAAVEKTASHPIAKAIINKAESLELVLPLTKGQIVEPGFGTLAEVDGRLVAVGSLDWVHERFKTKMNPSDLMNLERSLMNHSSSTSSSKYSKTVVYVGREGEGVIGVIAISDIVREDAESTVMRLKKKGIKTVLLSGDREEAVATIAETVGIENDFVKASLSPQQKSAFISSLKAAGHHVAMVGDGINDAPSLAAADVGIALQNEAQENAASDAASIILLGNKISQVIDALDLAQATMAKVYQNLSWAVAYNVVAVPIAAGVLLPQFDFAMTPSLSGGLMAMSSILVVSNSLLLKLHGSQTSGKGSL 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05056 882 PANTHER ATP7, ISOFORM B 73 871 - -
Trre5g05056 882 SUPERFAMILY HMA, heavy metal-associated domain 75 144 IPR036163 GO:0046872
Trre5g05056 882 Pfam E1-E2 ATPase 333 525 - -
Trre5g05056 882 FunFam Copper-transporting ATPase 1, putative 301 432 - -
Trre5g05056 882 Pfam Heavy-metal-associated domain 79 142 IPR006121 GO:0046872
Trre5g05056 882 Gene3D - 556 689 IPR023299 GO:0000166
Trre5g05056 882 ProSitePatterns E1-E2 ATPases phosphorylation site. 547 553 IPR018303 -
Trre5g05056 882 Coils Coil 157 177 - -
Trre5g05056 882 ProSiteProfiles Heavy-metal-associated domain profile. 75 145 IPR006121 GO:0046872
Trre5g05056 882 Pfam haloacid dehalogenase-like hydrolase 541 772 - -
Trre5g05056 882 Gene3D - 536 809 IPR023214 -
Trre5g05056 882 NCBIfam HAD-IC family P-type ATPase 337 850 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre5g05056 882 SFLD p-type atpase 528 811 IPR044492 -
Trre5g05056 882 SFLD Haloacid Dehalogenase 528 811 - -
Trre5g05056 882 CDD P-type_ATPase_HM 177 868 - -
Trre5g05056 882 SUPERFAMILY HAD-like 543 866 IPR036412 -
Trre5g05056 882 CDD HMA 79 143 IPR006121 GO:0046872
Trre5g05056 882 FunFam Copper-transporting ATPase PAA2, chloroplastic 556 689 - -
Trre5g05056 882 NCBIfam heavy metal translocating P-type ATPase 249 869 IPR027256 GO:0006812|GO:0016020|GO:0019829
Trre5g05056 882 Gene3D - 301 432 - -
Trre5g05056 882 PRINTS P-type cation-transporting ATPase superfamily signature 378 392 - -
Trre5g05056 882 PRINTS P-type cation-transporting ATPase superfamily signature 545 559 - -
Trre5g05056 882 PRINTS P-type cation-transporting ATPase superfamily signature 681 692 - -
Trre5g05056 882 PRINTS P-type cation-transporting ATPase superfamily signature 703 713 - -
Trre5g05056 882 PRINTS P-type cation-transporting ATPase superfamily signature 758 777 - -
Trre5g05056 882 SUPERFAMILY Calcium ATPase, transduction domain A 338 428 IPR008250 -
Trre5g05056 882 SUPERFAMILY Calcium ATPase, transmembrane domain M 281 539 IPR023298 -
Trre5g05056 882 Gene3D - 69 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05056 Trre-Chr5 51952117 51960912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05056 240 870 Primary Pumps ATPases AT1G63440 37.364 1.95e-117 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05056 K17686 - gmx:100127402 1408.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05056 5 51952117 51960912 Trre5g05056 5 51952117 51960912 ECH