Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05049 ATGGATGGTAATAAGCATCAAGGTGGTGAAGTAAGTATGGTGGAGAAGAAAACAGAACAAGTTGTGGTAGCAATTTCAAATGATCATCATGACCATGATCATGATCATGATCATGAGTTGAAAGGGATTGAATCTTCAAAGTCACCACCTTTTAACTGTGCTTCTCCTGAGATAAGATTCTTCCCTAGCCCAAATAAGCCCCCAAAAATTCCAACTACAAATGAAAATCTTACTCCAAGAAAAAATCTTGCAAGATCAGTGTATTCCAAGCCCAAATCAAGATTTGGTGAACAACCTTACCCTATTGATGGAACCCTTGTAGAAGAGAATGTTACTTCTTCACCATATAGGAACTCAATCAATAAAGGATCATCACATTCACCCAATAATAAATCCGGAACGGTTAATAGAACTGTTTCGATTACTTCTGTTGTCACTCCTAGAACACCTTTTTTGGCATCTCCAGGTCCTGCTGGTGAGGATCCTGATGAAATCATTTACAAGAAAGTTGAATTTAGTAAAGGCAAGCGTAAGAGACTAACGACTAAGGTTTTGATTGAATCGTTTGTGTTTGTGTGCATCGCGGGTAGCTTGTTGGCTAGTTTAACAGTTGAGGAACTAAGAAGGACACAAATTTGGAGTTTGAGGCTTTGGAGATGGTGTATGCTTGTTATGGTGACATTTTGTGGCATGTTAGTTACCAAATGGTTCATGCACATTGTTGTTTTCTTGATTGAAATGAACTTCTTGTTGAAGAAAAAAGTGCTTTATTTTGTCCATGGATTGAAGAAATGTGTCCAGGTTTTCATTTGGATCGGTTTGGTTCTCCTGACATGGGTGCTTTTTATCAATCATCGCGGTGTCCAGAGATCGAAATTGGCAGCAAATATTTTGGATGGTGTAACATGGACTCTTGTTTCACTTCTCATTGGAGCATTTTTGTGGCTCATAAAAACAACGTTGCTAAAGATTCTGGCATCGAATTTCCACGTCAAATCTTTCTTTGATCGAATTCAAGAATCGATCTTCCATCAATACGTTCTGCAGACTCTCTCTGGGCCTCCACTTATGGAAGAGGCTGAGAAAGTCGGCGGATCTCAAAGTATTAGCCATTTTAGTTTCAGGAGTACAACCAGTAAAGGTAGCACAAAGAAAGAGGTTATTGATATGGCTAAGCTTCATAGGATGAAGCAAGAGAAAGTTTCGTCGTGGACTATGAAGATTTTGGTAGATGCAGTGATGAATTCAAGGCTGGCCACAATCTCTAATTCACTAGATGAAACTTTTTATGATGCAGACAATGAACAAACTGATAAAGAAATTACTAATGAGATGGAAGCAACTGCTGCTGCCTATTACGTTTTCAGGAACGTTGCTGCTTCCGCTAGTTGCAAGGACATCGATGAGAATGAACTCCGTAGATTCCTGATTAAGGAAGAAGTTCCTTTGGTATTTCCCCTACTGGCACAGGCAGAAACCGGGCTAATTACCAGAAAATCTTTAGCAGATTGGGTGTTAAAGGTATATCAAGAACGGAAAGCACTGGCGCATGCATTAACCGATACTAAAACAGCTGTTAAACAATTAAACAAGCTTGTGACAGTGGTTCTAGTAGTGGTGACCATAGTAGTGTGGCTTCTTCTAATGGAGATTGCAACCACAAAAGTACTTGTGTTCCTCTCATCGCAGCTAGTACTTGCGGCTTTCATGTTTGGAAACACGTGCAAGAATATATTTGAAGCCATCATCTTCGTGTTTGTAATGCATCCATTTGATGTTGGTGATCGGTGTGTTATAGATGGCATTGAGCTATTGGTTGAAGAAATGAATATATTGACAACAGTATTCTTGAAACTTAATAATGAAAAGGTATATTATCCAAACTCTGTCCTGGCCGTAAAACCGATCAGCAATTATTACAGAAGCCCTAGTATGGGCGACAGTGTAGAGTTCTCGGTTGATTTTATGACACCAGCAGAGAAAATTGGAGCACTGAAAGAAAAAGTAAAGAGGTATTTGGAGAGAAATCCACAATATTGGTATCCTAATTTTGGCTTGGTAGTGAAGGAGATTGAAAATGTAAATAAGATTAAGATGGGTCTATATGTAACTCACACAATGAACTTTCAAGAATTTGGCGAGAAGACTAAGCGGAGAAGTGAACTAGTGATGGAAGTAAAGAAAATATTCGAAGAACTCAATATCAGATACAACCTTATTCCACAAGGTGTTCATCTCAGACACTTGGAACCTGCTGATACAAGTTATCTCAAATGA 2277 0.3887 MDGNKHQGGEVSMVEKKTEQVVVAISNDHHDHDHDHDHELKGIESSKSPPFNCASPEIRFFPSPNKPPKIPTTNENLTPRKNLARSVYSKPKSRFGEQPYPIDGTLVEENVTSSPYRNSINKGSSHSPNNKSGTVNRTVSITSVVTPRTPFLASPGPAGEDPDEIIYKKVEFSKGKRKRLTTKVLIESFVFVCIAGSLLASLTVEELRRTQIWSLRLWRWCMLVMVTFCGMLVTKWFMHIVVFLIEMNFLLKKKVLYFVHGLKKCVQVFIWIGLVLLTWVLFINHRGVQRSKLAANILDGVTWTLVSLLIGAFLWLIKTTLLKILASNFHVKSFFDRIQESIFHQYVLQTLSGPPLMEEAEKVGGSQSISHFSFRSTTSKGSTKKEVIDMAKLHRMKQEKVSSWTMKILVDAVMNSRLATISNSLDETFYDADNEQTDKEITNEMEATAAAYYVFRNVAASASCKDIDENELRRFLIKEEVPLVFPLLAQAETGLITRKSLADWVLKVYQERKALAHALTDTKTAVKQLNKLVTVVLVVVTIVVWLLLMEIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVIDGIELLVEEMNILTTVFLKLNNEKVYYPNSVLAVKPISNYYRSPSMGDSVEFSVDFMTPAEKIGALKEKVKRYLERNPQYWYPNFGLVVKEIENVNKIKMGLYVTHTMNFQEFGEKTKRRSELVMEVKKIFEELNIRYNLIPQGVHLRHLEPADTSYLK 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05049 758 FunFam Predicted mechanosensitive ion channel 590 639 - -
Trre5g05049 758 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 14 751 IPR016688 -
Trre5g05049 758 SUPERFAMILY Sm-like ribonucleoproteins 580 639 IPR010920 -
Trre5g05049 758 MobiDBLite consensus disorder prediction 28 77 - -
Trre5g05049 758 PIRSF Memb_At2g17000 4 756 IPR016688 -
Trre5g05049 758 Gene3D - 590 639 IPR023408 -
Trre5g05049 758 MobiDBLite consensus disorder prediction 115 135 - -
Trre5g05049 758 MobiDBLite consensus disorder prediction 28 44 - -
Trre5g05049 758 Pfam Mechanosensitive ion channel 530 736 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05049 Trre-Chr5 51918557 51921506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05049 39 746 Mechanosensitive Ion Channel Family AT5G12080 58.799 0.0 834
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05049 K22048 - gmx:100777617 1122.07