Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05043 ATGGATGGTAATAAGAATCAAGGTGGTGAAGTAAGTATGATGGAGAAGAAGAAAACAGAAGAAGTGGTGGTGGCAATTTCAAATGTGGGTGGAGAAACCCATTACCATGACAATGATCATGAGTTGAAAGGTGTTGAATATTCGCCTCGTTATGCATCGAAGTCGCCGCCTTTAAACTGTGCTTCACCTGAGATAAGGTTCATCCCTAGCCCAAATAAGCCCCCTAAAGTTCCAACTACAAATGAAAACCTTACCCCTAGAAAAAATCTTGCAAGATCAGTGTATTCTAAGCCCAAATCAAGATTTGGTGAACAACCTTATCCTATTGATGAAACCCTTTTAGAAGAGAATGTTACTTCAACTTTCCAAGAACAATTAGCTGTTAGTTCACCATATAGGAACTCATTTAATAACAAATCCGGAACGGTTAATAGAACCATCTCGATTACGTCTGTTGTCACTCCTAGGACGCCTTTGATGGCGTCTCCAGGTCCTGCTGGTGAGGATGATTTTGATGAAACCATTTACAAGAAAGTTGAATTAAGTAAAGGCAAGCGAAAGAGACTAACGACTAAGGTTTTGATCGAATTGTTTGTGTTTGTGTGCATTGCGGGTAGCTTGCTGGCTAGCTTAACTGTTGAGGAACTGAGAAGGACACAGATTTGGAGTTTAGGGCTTTGGAGGTGGTGTATGCTTGTGATGGTCACCTTTTGTGGCATGTTAGTTACCAAATGGTTCATGCACATTGTTGTTTTCTTGATTGAAATGAACTTCTTGTTGAAGAAAAAGGTACTTTATTTTGTCCATGGATTGAAGAAATGTGTCCAGGTTTTCATTTGGATCGGTTTTGTTCTCCTTACATGGGTACTTTTAATCAATCGTGGGGTCGAGCGATCTAAATTAGCCGAAAAGATTTTGGATGGTGTAACATGGACTCTCGTTTCACTTCTCATTGGAGCATTTTTGTGGGTTATAAAGACATTGTTGCTTAAGATTTTGGCTTCAAATTTCCATGTCAAATCTTTCTTTGATCGAATTCAAGAATCAATCTTTCATCAGTATGTTCTGCAGACTCTCTCTGGGCCTCCACTTATTGAAGAGGCCGAGAAAGTCGGTGGATCTCAAAGTATAGGACATTTTAGTTTCAGGAGTGCAATTGGTAAAGGTGGCACAAAGAAAAAGGTTATTGATATGGCAAAGCTTCAAAGGATGAAGCAAGAGAAAGTTTCGTCGTGGACTATGAAGATTTTGGTAGATGCAGTGATGAATTCAAGGCTGTCCACAATCTCTAATTCACTAGATGAAACTTTTTATGATGTAGACAATGAACAAACTGATAAAGAAATTACTAATGAGATGGAAGCAACTGCTGCTGCCTATTACGTTTTCAGGAATGTTGCTGCTTCCGCTAGTTGCAAGGACATCGATGAGGATGAACTACGTCGATTCATGATTAAGGAAGAAGTTCCTTTGGTATTTCCCCTACTGGCACAGCCAGAGACAGGATTAATCACCAGAAAGTCTTTAGCAGATTGGGTGTTGAAAGTATATCAAGAACGTAGAGCACTCGCACACGCCTTATGTGATACTAAAACAGCTGTTAAACAATTAAACAAGCTCGTGACAGGTGTCCTAGTACTGGTGACCATAGTAGTGTGGCTTCTTCTAATGGAGATTGCAACCACAAAAGTACTCGTATTCCTCTCATCACAGCTGGTACTTGCAGCTTTCATGTTTGGAAACACGTGCAAGAATATATTCGAAGCCATAATCTTTGTTTTTGTAATGCATCCATTTGACGTTGGTGATCGATGTGTTATAGATGGTGTTGAGCTATTGGTTGAAGAAATGAATATACTGACAACAGTATTCTTGAAGCTTAATAATGAAAAGCTGTATTATCCAAACTCTGTCCTCGCCACAAAACCAATTAGCAATTATTACAGAAGCCCAAATATGGGTGACAGTGTAGAGTTCTCGGTTGATTTTACGACACCAGTAGAGAAAATTGGAGCACTGAAAGAAAAAGTAAAAAGGTATATGGAGAAGAATCCACAATTCTGGCATCCTAATTTTGGCTTGGTAGTGAAGGAGATTGAAAATGTAAATAAGATTAAGATGGGTGTTTATGTGACTCACACAATGAACTTTCAAGAGTTTGCTGAGAAGAACAAGCGGAGAAGTGAACTAGTGATGGAAGTAAAGAAAATATTTGAAGAACTCAATATCAGATACAACCTTATTCCACAAGGTGTTCATCTCAGACACTTGGAATCTGATACAAGTTATGACAGATGA 2298 0.3899 MDGNKNQGGEVSMMEKKKTEEVVVAISNVGGETHYHDNDHELKGVEYSPRYASKSPPLNCASPEIRFIPSPNKPPKVPTTNENLTPRKNLARSVYSKPKSRFGEQPYPIDETLLEENVTSTFQEQLAVSSPYRNSFNNKSGTVNRTISITSVVTPRTPLMASPGPAGEDDFDETIYKKVELSKGKRKRLTTKVLIELFVFVCIAGSLLASLTVEELRRTQIWSLGLWRWCMLVMVTFCGMLVTKWFMHIVVFLIEMNFLLKKKVLYFVHGLKKCVQVFIWIGFVLLTWVLLINRGVERSKLAEKILDGVTWTLVSLLIGAFLWVIKTLLLKILASNFHVKSFFDRIQESIFHQYVLQTLSGPPLIEEAEKVGGSQSIGHFSFRSAIGKGGTKKKVIDMAKLQRMKQEKVSSWTMKILVDAVMNSRLSTISNSLDETFYDVDNEQTDKEITNEMEATAAAYYVFRNVAASASCKDIDEDELRRFMIKEEVPLVFPLLAQPETGLITRKSLADWVLKVYQERRALAHALCDTKTAVKQLNKLVTGVLVLVTIVVWLLLMEIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVIDGVELLVEEMNILTTVFLKLNNEKLYYPNSVLATKPISNYYRSPNMGDSVEFSVDFTTPVEKIGALKEKVKRYMEKNPQFWHPNFGLVVKEIENVNKIKMGVYVTHTMNFQEFAEKNKRRSELVMEVKKIFEELNIRYNLIPQGVHLRHLESDTSYDR 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05043 765 SUPERFAMILY Sm-like ribonucleoproteins 588 647 IPR010920 -
Trre5g05043 765 PIRSF Memb_At2g17000 4 765 IPR016688 -
Trre5g05043 765 FunFam Predicted mechanosensitive ion channel 598 647 - -
Trre5g05043 765 Gene3D - 598 647 IPR023408 -
Trre5g05043 765 Pfam Mechanosensitive ion channel 539 744 IPR006685 GO:0016020|GO:0055085
Trre5g05043 765 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 12 758 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05043 Trre-Chr5 51906159 51909084 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05043 43 754 Mechanosensitive Ion Channel Family AT5G12080 59.275 0.0 842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05043 K22048 - gmx:100803107 1160.59