Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05042 ATGATGGAGAAGAAAAGAGAAGTGGTGGTGGCAATTTCAAATATAGATGAACAAGAGAGCAATGATCATGATGATCATGGGTTGAAAGTGTTTGAATCTATGCCTCAACGAGAAAATGAACATGCTTCAAAGTCACTACCACCTTTAAACCGTGTTTCTTCTGAAATAAGGTTCATCCCAAGTCCAAATAAGTCCCCAAAAGCTCATGCTACAAATGAAAACCTTACCCCAAGAAAAACTTTTGTAAGATCAGTGTATTCTAAGCCCAAATCAAGGTTTGGTGAACAACCTTACCTTTTTGATGAAACCCTTTTAGAAGAGAATGTTACTTCTTTAAATTTACAAGAAAAATTAGCTTTTAGGAACTCATTCAATAAAGAATCGCATTCACCTTCGACGGCATCTCAAAGTTCTTTTGGTGAGGATGAGGATCCTGATGAAATCATTTACAAGAAAGTTGAATTTAGTAAAGGCAAGCATAAGATACTACTAACGACTAAGGTTTTGATCGAATTGTTTGTGTTTGTCTGCTTCGCGGGTAGCTTGTTGGCTAGCCTAATAGTTGAGGAGCTTAGAAGGACAGAGATTTGGAGCTTAGGACTTTGGAGGTGGTGTATGCTTGTGATGGTGACATTTTGTGGCATGTTGTTTACCAAATGGTTCATGCACATTGTTATTTTTATGATTGAAATGAACTTCTTGTTGAGGAAAAAGGTGCTTTATTTTGTCCATGGAGTGAAGAAATATGTCCAGGTTTTCATTTGGATCGGTTTGATTCTCCTCACATGGACGCTTTTTATCAATCACGGGGTCCAAGTCCAACGATCTAAATTGGCAGCAAAATTTTTGAATGATGTAACATGGACTCTTGTTTCCCTTCTCATTGGAGCATTTTTGTGGGTCATAAAGAAATTCTTGCTAAAGACTTTGGCATTGAATTTCCATGTGAAGTCTTTCTTTGATCGAATTCAAGAATCGATCTTCCATCAGTATGTTCTGCAGACTCTCTCTGGGCCTCCACTTATGGATGAGGCTGAGAAAGTTGGGGGATCACAGAGTATAGGCCATTTTAGTTTCAGGAGTACAACTGGTAAAGGTGGCATAAAGAAAGAGGTTATTGATATGGCAAAGCTTCACAAGATGAAGCAAGAGAAAGTTTCCGCGTGGACTATGAAGATTTTGGTAGATGCAGTGATGAATTCAAGGCTGTCCACAATCTCCAATTCACTAGATGAAAGTTTTTATGATGTAAAAAATGAACAAACTGATAAAGAAATTACTAATGAGATGGAGGCAACTGCTGCTGCCTATTATGTTTTCAAGAATGTTGCTGCTTCCCCTTGTTGCAAGGACATTGATGAGAATGAACTCCGTCGATTCATGATTAAAGAAGAAGTACCTTTGGTATTTCCCCTACTGGCACAGGCAGAGACAGGGCTAATTACCAGAAAGTCTTTAGCAAATTGGGTGTTGAAGGTATATCAAGAACGTAGAGCACTCGCACACGCCTTATGCGACACTAAAACAGCTGTTAAACAATTAAACAAGCTCGTGACAGGAGTCCTAGTACTGGTGACCATAGTAGTGTGGCTTCTTCTAATGGAGATTGCAACCACAAAAGTACTTGTATTCCTCTCATCGCAGCTAGTACTTGCGGGTTTCATGTTTGGAAACACATGCAAGAATATATTTGAAGCAATCATCTTCGTGTTTGTAATGCATCCGTTCGATGTTGGCGATCGGTGTGTTGTAGATGGTGTTGAGCTATTGGTTGAAGAAATGAATATAATGACAACAGTATTCCTGAAGCTTAATAATGAAAAGGTCTATTATCCAAACTTTGTCCTCGCCACAAAACCGATTAGCAACTATTACAGAAGTCCAAATATGGTTGATGGTGTAGAGTTTTCAATTGATTTTACGACACCAGCAGAGAAAATTGGAGCATTGAAAGAAAAAATACATAGGTACTTGGAGAGGAATCCACAATACTGGCATCCTAGTTTTGGCTTGTTTGTGTTAGAGATTGAAAATGTAAATAAGATTAAGATGGGTCTATATGTAACTCACACAATGAACTTTCAAGATTTTGGGGAGAAGGTGAAGCGGAAAAGTGAACTAGTGATGGAAGTAAAGAGAATATTTGAAGAGCTCAATATCAGATACAACCTTCTTCCACAAGGTGTTCATCTCAGACACATGGAACCTGACATAAGTTATCTCAAATGA 2229 0.3836 MMEKKREVVVAISNIDEQESNDHDDHGLKVFESMPQRENEHASKSLPPLNRVSSEIRFIPSPNKSPKAHATNENLTPRKTFVRSVYSKPKSRFGEQPYLFDETLLEENVTSLNLQEKLAFRNSFNKESHSPSTASQSSFGEDEDPDEIIYKKVEFSKGKHKILLTTKVLIELFVFVCFAGSLLASLIVEELRRTEIWSLGLWRWCMLVMVTFCGMLFTKWFMHIVIFMIEMNFLLRKKVLYFVHGVKKYVQVFIWIGLILLTWTLFINHGVQVQRSKLAAKFLNDVTWTLVSLLIGAFLWVIKKFLLKTLALNFHVKSFFDRIQESIFHQYVLQTLSGPPLMDEAEKVGGSQSIGHFSFRSTTGKGGIKKEVIDMAKLHKMKQEKVSAWTMKILVDAVMNSRLSTISNSLDESFYDVKNEQTDKEITNEMEATAAAYYVFKNVAASPCCKDIDENELRRFMIKEEVPLVFPLLAQAETGLITRKSLANWVLKVYQERRALAHALCDTKTAVKQLNKLVTGVLVLVTIVVWLLLMEIATTKVLVFLSSQLVLAGFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVVDGVELLVEEMNIMTTVFLKLNNEKVYYPNFVLATKPISNYYRSPNMVDGVEFSIDFTTPAEKIGALKEKIHRYLERNPQYWHPSFGLFVLEIENVNKIKMGLYVTHTMNFQDFGEKVKRKSELVMEVKRIFEELNIRYNLLPQGVHLRHMEPDISYLK 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05042 742 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 5 736 IPR016688 -
Trre5g05042 742 Pfam Mechanosensitive ion channel 516 721 IPR006685 GO:0016020|GO:0055085
Trre5g05042 742 MobiDBLite consensus disorder prediction 33 52 - -
Trre5g05042 742 PIRSF Memb_At2g17000 1 740 IPR016688 -
Trre5g05042 742 SUPERFAMILY Sm-like ribonucleoproteins 565 624 IPR010920 -
Trre5g05042 742 Gene3D - 575 624 IPR023408 -
Trre5g05042 742 FunFam Predicted mechanosensitive ion channel 575 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05042 Trre-Chr5 51899288 51902194 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05042 32 731 Mechanosensitive Ion Channel Family AT5G12080 57.083 0.0 789
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05042 K22048 - gmx:100777617 1021.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05042 5 51899288 51902194 Trre5g05042 5 51899288 51902194 ECH