Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05041 ATGGTAGTAAGCAATAAGCATCAAGGTAGTGAAATAAGCATGATGGAGAAGAAAAGAGAAGTGGTGGTGGCAATTTCAAATATAGATGAACAAGAGAGCAATGATCATGATGATCATGGGTTGAAAGTGTTTGAATCTATGCCTCAACGAGAAAATGAACATGCTTCAAAGTCACTACCACCTTTAAACCGTGTTTCTTCTGAAATAAGGTTCATCCCAAGTCCAAATAAGTCCCCAAAAGCTCATGCTACAAATGAAAACCTTACCCCAAGAAAAACTTTTGTAAGATCAGTGTATTCTAAGCCCAAATCAAGGTTTGGTGAACAACCTTACCTTTTTGATGAAACCCTTTTAGAAGAGAATGTTACTTCTTTAAATTTACAAGAAAAATTAGCTTTTAGGAACTCATTCAATAAAGAATCGCATTCACCTTCGACGGCATCTCAAAGTTCTTTTGGTGAGGATGAGGATCCTGATGAAATCATTTACAAGAAAGTTGAATTTAGTAAAGGCAAGCATAAGATACTACTAACGACTAAGGTTTTGATCGAATTGTTTGTGTTTGTCTGCTTCGCGGGTAGCTTGTTGGCTAGCCTAATAGTTGAGGAGCTTAGAAGGACAGAGATTTGGAGCTTAGGACTTTGGAGGTGGTGTATGCTTGTGATGGTGACATTTTGTGGCATGTTGTTTACCAAATGGTTCATGCACATTGTTATTTTTATGATTGAAATGAACTTCTTGTTGAGGAAAAAGGTGCTTTATTTTGTCCATGGAGTGAAGAAATATGTCCAGGTTTTCATTTGGATCGGTTTGATTCTCCTCACATGGACGCTTTTTATCAATCACGGGGTCCAAGTCCAACGATCTAAATTGGCAGCAAAATTTTTGAATGATGTAACATGGACTCTTGTTTCCCTTCTCATTGGAGCATTTTTGTGGGTCATAAAGAAATTCTTGCTAAAGACTTTGGCATTGAATTTCCATGTGAAGTCTTTCTTTGATCGAATTCAAGAATCGATCTTCCATCAGTATGTTCTGCAGACTCTCTCTGGGCCTCCACTTATGGATGAGGCTGAGAAAGTTGGGGGATCACAGAGTATAGGCCATTTTAGTTTCAGGAGTACAACTGGTAAAGGTGGCATAAAGAAAGAGGTTATTGATATGGCAAAGCTTCACAAGATGAAGCAAGAGAAAGTTTCCGCGTGGACTATGAAGATTTTGGTAGATGCAGTGATGAATTCAAGGCTGTCCACAATCTCCAATTCACTAGATGAAAGTTTTTATGATGTAAAAAATGAACAAACTGATAAAGAAATTACTAATGAGATGGAGGCAACTGCTGCTGCCTATTATGTTTTCAAGAATGTTGCTGCTTCCCCTTGTTGCAAGGACATTGATGAGAATGAACTCCGTCGATTCATGATTAAAGAAGAAGTACCTTTGGTATTTCCCCTACTGGCACAGGCAGAGACAGGGCTAATTACCAGAAAGTCTTTAGCAAATTGGGTGTTGAAGGTATATCAAGAACGTAGAGCACTCGCACACGCCTTATGCGACACTAAAACAGCTGTTAAACAATTAAACAAGCTCGTGACAGGAGTCCTAGTACTGGTGACCATAGTAGTGTGGCTTCTTCTAATGGAGATTGCAACCACAAAAGTACTTGTATTCCTCTCATCGCAGCTAGTACTTGCGGGTTTCATGTTTGGAAACACATGCAAGAATATATTTGAAGCAATCATCTTCGTGTTTGTAATGCATCCGTTCGATGTTGGCGATCGGTGTGTTGTAGATGGTGTTGAGCTATTGGTTGAAGAAATGAATATAATGACAACAGTATTCCTGAAGCTTAATAATGAAAAGGTCTATTATCCAAACTTTGTCCTCGCCACAAAACCGATTAGCAACTATTACAGAAGTCCAAATATGGTTGATGGTGTAGAGTTTTCAATTGATTTTACGACACCAGCAGAGAAAATTGGAGCATTGAAAGAAAAAATACATAGGTACTTGGAGAGGAATCCACAATACTGGCATCCTAGTTTTGGCTTGTTTGTGTTAGAGATTGAAAATGTAAATAAGATTAAGATGGGTCTATATGTAACTCACACAATGAACTTTCAAGATTTTGGGGAGAAGGTGAAGCGGAAAAGTGAACTAGTGATGGAAGTAAAGAGAATATTTGAAGAGCTCAATATCAGATACAACCTTCTTCCACAAGGTGTTCATCTCAGACACATGGAACCTGACATAAGTTATCTCAAATGA 2268 0.3832 MVVSNKHQGSEISMMEKKREVVVAISNIDEQESNDHDDHGLKVFESMPQRENEHASKSLPPLNRVSSEIRFIPSPNKSPKAHATNENLTPRKTFVRSVYSKPKSRFGEQPYLFDETLLEENVTSLNLQEKLAFRNSFNKESHSPSTASQSSFGEDEDPDEIIYKKVEFSKGKHKILLTTKVLIELFVFVCFAGSLLASLIVEELRRTEIWSLGLWRWCMLVMVTFCGMLFTKWFMHIVIFMIEMNFLLRKKVLYFVHGVKKYVQVFIWIGLILLTWTLFINHGVQVQRSKLAAKFLNDVTWTLVSLLIGAFLWVIKKFLLKTLALNFHVKSFFDRIQESIFHQYVLQTLSGPPLMDEAEKVGGSQSIGHFSFRSTTGKGGIKKEVIDMAKLHKMKQEKVSAWTMKILVDAVMNSRLSTISNSLDESFYDVKNEQTDKEITNEMEATAAAYYVFKNVAASPCCKDIDENELRRFMIKEEVPLVFPLLAQAETGLITRKSLANWVLKVYQERRALAHALCDTKTAVKQLNKLVTGVLVLVTIVVWLLLMEIATTKVLVFLSSQLVLAGFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVVDGVELLVEEMNIMTTVFLKLNNEKVYYPNFVLATKPISNYYRSPNMVDGVEFSIDFTTPAEKIGALKEKIHRYLERNPQYWHPSFGLFVLEIENVNKIKMGLYVTHTMNFQDFGEKVKRKSELVMEVKRIFEELNIRYNLLPQGVHLRHMEPDISYLK 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05041 755 PIRSF Memb_At2g17000 3 753 IPR016688 -
Trre5g05041 755 FunFam Predicted mechanosensitive ion channel 588 637 - -
Trre5g05041 755 Gene3D - 588 637 IPR023408 -
Trre5g05041 755 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 15 749 IPR016688 -
Trre5g05041 755 SUPERFAMILY Sm-like ribonucleoproteins 578 637 IPR010920 -
Trre5g05041 755 Pfam Mechanosensitive ion channel 529 734 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05041 Trre-Chr5 51899249 51902194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05041 45 744 Mechanosensitive Ion Channel Family AT5G12080 57.083 0.0 789
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05041 K22048 - gmx:100777617 1029.24