Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05039 ATGAACACAAGAAATAGTCCTCAAACTCAAAAGAGTCTATCTCGGCAGTCATCGAAGTCAAATTCGAGGGCGAAGCAAGAGCCACTTAGCCCATTTTCCGGTGGTGGATGTTGTCGAGGCTTCACCAGCGTGAAGACCGTGGCATCCACCACATCAACTTTGCAACAACATCAGCAGATCCAACAGCGTAATGAGAGTTTGGAAGTGAAGGTGGGAGATTTGGAAAAGGAGGTGCAAAAGCAAACAGAACTCAGAGTGATGTATAGAAAAAGAATGGAAAGAACACAAGACTATTTAAGGTACTGCCTCCAAATAGCACAAGAGAATGGAATCTTGGAACACATTGTCCAATCCAAAGGTGAACTTCAACATTCTCCTCTCAATGTCAGCTCCATTACCAATAGTCCTCAAATTCTTACTCCAACAATGCACCAGCACCACCCCAATCTAGAGGCCATCATTGATCAAGCCAAAATCAATGGATGGTATATTAACCCAACCGAGATTCAATTGGATGAGAAAATAGGACAAGGAACCACTGCAGACATCTACAGGGGAGCATGGCGTGGATTTGATGTTGCAGTGAAATGCATTTCACCTGAATTCTTCCGCACAAATGCAAATGGTGTTGAATTCTTTGCTCAAGAGGTTGAAACTCTCTCAAAGCAACGCCATAGGTTTGTGCTTAATCTAATGGGTGCATGTCTTAACCCTCCTAATCATGCATGGGTTGTTACTGAGTATCTAAACACCACACTAAAGGAGTGGCTTCATGGTCCCGGCAAAAGGCGGAGAGATAGAATTGTGTCGCTTCCTTCTCTCAAAGACAGAGTAATAAGGGCCTCAGAGATAGCCCAAGCTATGCAGTATCTTCACGAGCAAAAGCCCAAAATTATTCACCGGGACTTGAAGCCGAGCAACATTTTCTTAGACTTTGACTTGCATGTTAGAGTTGCTGATTTTGGACATGCTCGTTTCTTAGGGGATGGAGAAATGGCGCTCACCGGAGAAACAGGAACATATGTGTATATGGCACCGGAGGTGATACGATGTGAGCCCTATAATGAAAAATGTGATGTATACAGTTTTGGAGTCATATTGAACGAGCTTCTCACAGGAAAACATCCCTACATTGAGACAGAATATGGTCCGGCCAAGATTGCTATGGAGGTTGTAGAGGGCAAGCTGCGGCCTATGCTTCCTTCACGGGACGATGGTGAGCCACTGGCAGAATTGATTGACCTTATACGTCTTTGTTGGGATGGAAACCCCTCCACTAGACCATCCTTTGATACAATTAGTCGTATTCTCAAAAGTTATACCAATAGGGTCCTTCATTTTTCAAAGTAA 1350 0.4393 MNTRNSPQTQKSLSRQSSKSNSRAKQEPLSPFSGGGCCRGFTSVKTVASTTSTLQQHQQIQQRNESLEVKVGDLEKEVQKQTELRVMYRKRMERTQDYLRYCLQIAQENGILEHIVQSKGELQHSPLNVSSITNSPQILTPTMHQHHPNLEAIIDQAKINGWYINPTEIQLDEKIGQGTTADIYRGAWRGFDVAVKCISPEFFRTNANGVEFFAQEVETLSKQRHRFVLNLMGACLNPPNHAWVVTEYLNTTLKEWLHGPGKRRRDRIVSLPSLKDRVIRASEIAQAMQYLHEQKPKIIHRDLKPSNIFLDFDLHVRVADFGHARFLGDGEMALTGETGTYVYMAPEVIRCEPYNEKCDVYSFGVILNELLTGKHPYIETEYGPAKIAMEVVEGKLRPMLPSRDDGEPLAELIDLIRLCWDGNPSTRPSFDTISRILKSYTNRVLHFSK 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05039 449 Gene3D Transferase(Phosphotransferase) domain 1 272 447 - -
Trre5g05039 449 Gene3D Phosphorylase Kinase; domain 1 151 250 - -
Trre5g05039 449 MobiDBLite consensus disorder prediction 1 28 - -
Trre5g05039 449 PIRSF TyrPK_CSF1-R 264 444 - -
Trre5g05039 449 PIRSF TyrPK_CSF1-R 191 258 - -
Trre5g05039 449 PIRSF TyrPK_CSF1-R 21 138 - -
Trre5g05039 449 SUPERFAMILY Protein kinase-like (PK-like) 145 435 IPR011009 -
Trre5g05039 449 MobiDBLite consensus disorder prediction 1 34 - -
Trre5g05039 449 Pfam Protein kinase domain 171 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05039 449 Coils Coil 57 84 - -
Trre5g05039 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 298 310 IPR008271 GO:0004672|GO:0006468
Trre5g05039 449 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 52 438 - -
Trre5g05039 449 ProSiteProfiles Protein kinase domain profile. 169 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05039 449 SMART serkin_6 169 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05039 449 CDD STKc_MAP3K-like 175 437 - -
Trre5g05039 449 ProSitePatterns Protein kinases ATP-binding region signature. 175 196 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05039 Trre-Chr5 51873034 51877316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05039 162 444 MAP Kinase Kinase Kinase AT4G35780 35.563 1.54e-48 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-8 Trre5g05039 Pkinase 7.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05039 - - gmx:100810435 687.952