Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05034 ATGCATGAGAATCAACAACAAAATCTACCTTCAATTCAAATTCCTGTTTTGCCAAACCATGATCAAGTGCTAGCAATTGATCAATGGCCACCCACACAACTCCCATTTTTTTGCTCTTGTTGTCAAGTTCTTAGAGAAATCATTCATACTAATGGTTTTCAATTTGAAAAGTTTGAGATTCATGGAAGAGTAGGGTTGATTACACATGCAATTCATCATCATTTACCTGTTAATGGGAACACTTCAAGTTATCAAATGATTGATTTTTCCAAGAGTAGCCTTGATGAAATAAAGAAATATTTGGCGAAATACTGCGTGGATCGTAATACATTCGGATACTCTACTCTGCAAGATCCAATGTCTGCATTTTATGAAACTCTTTGCACTGGATTGGATTGGATTGATGATATTAATATGGAAGGTCCTCTTTATAATAATCAAAATAATACAGATGAGATAGGTGAAGGTGAGAATGGAACGTCAGAAAAAAAGGACCTCTCATCACAGAGGAAAAAATCTGCAAGCATGACATTGCATGATTTACGCGATTACTTTCATCTACCGATTGAGGAAGCATCAGATCATCCGAATGTGAAGTTATGTCCATCAGTTCTGAAGAAAACATGTCGTAAAGCCGGATTACAAAGATGGCCTCATAGAAAGGTGAAAAGTCTTTTGAAGCAGATTGCATTAATGGAAGCACAATTGGATGGACAAGATCCCGCGAGAAGGGCAAGGACTGAAGAAGAAATTGAAAGGCTTAAACAAGAAATGATTACACATTGTGGCGGTATCATACCAACCGCGATGAATAACATAGCCACCTTCTTGCCGCCGCGGTATCAGCAGCAGCAGCAGTAG 861 0.3833 MHENQQQNLPSIQIPVLPNHDQVLAIDQWPPTQLPFFCSCCQVLREIIHTNGFQFEKFEIHGRVGLITHAIHHHLPVNGNTSSYQMIDFSKSSLDEIKKYLAKYCVDRNTFGYSTLQDPMSAFYETLCTGLDWIDDINMEGPLYNNQNNTDEIGEGENGTSEKKDLSSQRKKSASMTLHDLRDYFHLPIEEASDHPNVKLCPSVLKKTCRKAGLQRWPHRKVKSLLKQIALMEAQLDGQDPARRARTEEEIERLKQEMITHCGGIIPTAMNNIATFLPPRYQQQQQ 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05034 286 Pfam RWP-RK domain 175 225 IPR003035 -
Trre5g05034 286 PANTHER PROTEIN RKD4 5 258 IPR044607 GO:0003700
Trre5g05034 286 MobiDBLite consensus disorder prediction 156 174 - -
Trre5g05034 286 ProSiteProfiles RWP-RK domain profile. 158 245 IPR003035 -
Trre5g05034 286 MobiDBLite consensus disorder prediction 145 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05034 Trre-Chr5 51840721 51842158 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05034 136 259 AtRKD Transcription Factor Family AT5G66990 31.298 3.69e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Trre5g05034 RWP-RK 1.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05034 - - tpra:123895752 488.034