Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05033 ATGGAAGAAATGTTTTATTTTGATGATGAAAATTCCATTGACCCAGATTTTTTCAATATGACTAATCCAACACTAGCAGATTTATCCAGGGACAATAGTAGTAACAACAATGGACCCCTCTCAAATCACCATGGACTTGGCATACTTCAATGGGGACAAAGTAGTAATTTTAATGATCACTTTACCACTCCACTTTCCCAACAAAATCACCATGATGTTAATATTCAAATGTCACAACAAAATCAACATGGTGTATTTCATGATACTAATGCATTGTCACAACAAAATCACCAACAAAGACAAGGTGGTAATAATGATCCATTTCATTACAATCTAATATCACCAGAAGATAATCAACAAGGGCAAGTTAGTAATAGTGATCAATTTCAATACAATCTAATATCACCAGAAAATAATCAACAAGGGCAAGGTGGTAATAATGGTCCATTATTTACCAATGAAATGTCACACCATGGTGGTAATAGTCAAAGTTTTCCTCAAGCAATGGTTCAAGAACAATATGTTGAAAACAATAATAATAATAATTTTTCACTTGGAGGAAACAATTTTGAAGTGGGTGGTACATCATCACAAATGCATGAGAATCAACAACAAAATCTACCTTCAATTCAAATTCCTGTTTTGCCAAACCATGATCAAGTGCTAGCAATTGATCAATGGCCACCCACACAACTCCCATTTTTTTGCTCTTGTTGTCAAGTTCTTAGAGAAATCATTCATACTAATGGTTTTCAATTTGAAAAGTTTGAGATTCATGGAAGAGTAGGGTTGATTACACATGCAATTCATCATCATTTACCTGTTAATGGGAACACTTCAAGTTATCAAATGATTGATTTTTCCAAGAGTAGCCTTGATGAAATAAAGAAATATTTGGCGAAATACTGCGTGGATCGTAATACATTCGGATACTCTACTCTGCAAGATCCAATGTCTGCATTTTATGAAACTCTTTGCACTGGATTGGATTGGATTGATGATATTAATATGGAAGGTCCTCTTTATAATAATCAAAATAATACAGATGAGATAGGTGAAGGTGAGAATGGAACGTCAGAAAAAAAGGACCTCTCATCACAGAGGAAAAAATCTGCAAGCATGACATTGCATGATTTACGCGATTACTTTCATCTACCGATTGAGGAAGCATCAGATCATCCGAATGTGAAGTTATGTCCATCAGTTCTGAAGAAAACATGTCGTAAAGCCGGATTACAAAGATGGCCTCATAGAAAGGTGAAAAGTCTTTTGAAGCAGATTGCATTAATGGAAGCACAATTGGATGGACAAGATCCCGCGAGAAGGGCAAGGACTGAAGAAGAAATTGAAAGGCTTAAACAAGAAATGATTACACATTGTGGCGGTATCATACCAACCGCGATGAATAACATAGCCACCTTCTTGCCGCCGCGGTATCAGCAGCAGCAGCAGTAG 1455 0.3615 MEEMFYFDDENSIDPDFFNMTNPTLADLSRDNSSNNNGPLSNHHGLGILQWGQSSNFNDHFTTPLSQQNHHDVNIQMSQQNQHGVFHDTNALSQQNHQQRQGGNNDPFHYNLISPEDNQQGQVSNSDQFQYNLISPENNQQGQGGNNGPLFTNEMSHHGGNSQSFPQAMVQEQYVENNNNNNFSLGGNNFEVGGTSSQMHENQQQNLPSIQIPVLPNHDQVLAIDQWPPTQLPFFCSCCQVLREIIHTNGFQFEKFEIHGRVGLITHAIHHHLPVNGNTSSYQMIDFSKSSLDEIKKYLAKYCVDRNTFGYSTLQDPMSAFYETLCTGLDWIDDINMEGPLYNNQNNTDEIGEGENGTSEKKDLSSQRKKSASMTLHDLRDYFHLPIEEASDHPNVKLCPSVLKKTCRKAGLQRWPHRKVKSLLKQIALMEAQLDGQDPARRARTEEEIERLKQEMITHCGGIIPTAMNNIATFLPPRYQQQQQ 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05033 484 ProSiteProfiles RWP-RK domain profile. 356 443 IPR003035 -
Trre5g05033 484 PANTHER PROTEIN RKD4 196 456 IPR044607 GO:0003700
Trre5g05033 484 MobiDBLite consensus disorder prediction 93 124 - -
Trre5g05033 484 MobiDBLite consensus disorder prediction 343 372 - -
Trre5g05033 484 Pfam RWP-RK domain 373 423 IPR003035 -
Trre5g05033 484 MobiDBLite consensus disorder prediction 354 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05033 Trre-Chr5 51840721 51842752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05033 334 457 AtRKD Transcription Factor Family AT5G66990 31.298 2.20e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Trre5g05033 RWP-RK 3.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05033 - - tpra:123895752 699.893