Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05031 ATGAGTTTAAGAACAAAAGAAGATGATTCATCTTCTGAAATCCATATACCAGCTGAAATTGATTGGCATATGTTAGACAAATCAAAGTTTTTCTTCCTTGGCGCCGCCTTATTCTCTGGTGTTTCAGCTGCACTTTATCCAATGGTTGTTTTGAAAACTCGTCAACAGGTTTCTTCTTCACACTACTCTTGTATCAACATGTCTTGTGCTATTATGCGTTATGAAGGTTTTAGAGGTTTTTATAAAGGTTTTGGTACTTCTTTAATGGGAACTATTCCTGCTAGAGCACTTTATATGACAGCACTTGAAGTTACAAAGAGTAACGTTGGTACTGCTTTTGTTGAATTGGGTTTTTCTGATAATACTGCTACTGCTGTTGCTAGTGCTGCTGCTGGTGTTACTTCTGCTATGTCTGCACAATTAGTTTGGACCCCAATTGATGTTGTGAGTCAAAGACTCATGGTACAAGGTTGTAGTAGTAGTAGTAGTAATGTTGGTGGTGGAAAGAGTATTTTGGCTAATCTTAACTCTGAGAATTATAGAAATGGTTTGGATGTTTTTAGGAAAATTCTTTATGCTGATGGACCTAGAGGGTTCTATAGAGGATTTGGAATTTCAATATTGACTTATGCACCTTCTAATGCTGTTTGGTGGACTTCTTATTCTATGGTTCATAGGTTCATTTGGGGTAAATTTGGTTCATGTTTGTGTAAGAGTGATAGTTTAGGTGATGATGGGTGTGTTGGTTTTAGGCCTGATTCTAAGGCAATGGTAGGTGTACAAGGTTTGAGTGCTGTTGTGGCTAGTGGGGTTTCTGCAATTGTGACAATGCCTTTTGATACAATTAAGACTAGGTTGCAGGTTTTGGATACAGAAGAGAATGGTAGAAGAAGGCCATTAACTTTTGTGCAAACTGTTAGGAATTTGGTGAATGAAGGTGGTTTGTTTGCTTGTTACAGAGGATTAGGACCAAGGTGGGTTTCTATGTCTATGTCTGCTACAACTATGATTACAACTTACGAGTTTTTGAAACGCTTGTCTACCAAGAGACAAGATTGA 1059 0.3787 MSLRTKEDDSSSEIHIPAEIDWHMLDKSKFFFLGAALFSGVSAALYPMVVLKTRQQVSSSHYSCINMSCAIMRYEGFRGFYKGFGTSLMGTIPARALYMTALEVTKSNVGTAFVELGFSDNTATAVASAAAGVTSAMSAQLVWTPIDVVSQRLMVQGCSSSSSNVGGGKSILANLNSENYRNGLDVFRKILYADGPRGFYRGFGISILTYAPSNAVWWTSYSMVHRFIWGKFGSCLCKSDSLGDDGCVGFRPDSKAMVGVQGLSAVVASGVSAIVTMPFDTIKTRLQVLDTEENGRRRPLTFVQTVRNLVNEGGLFACYRGLGPRWVSMSMSATTMITTYEFLKRLSTKRQD 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05031 352 ProSiteProfiles Solute carrier (Solcar) repeat profile. 256 346 IPR018108 -
Trre5g05031 352 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 10 351 - -
Trre5g05031 352 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
Trre5g05031 352 Pfam Mitochondrial carrier protein 39 108 IPR018108 -
Trre5g05031 352 Pfam Mitochondrial carrier protein 124 230 IPR018108 -
Trre5g05031 352 Pfam Mitochondrial carrier protein 261 349 IPR018108 -
Trre5g05031 352 Gene3D Mitochondrial carrier domain 29 352 IPR023395 -
Trre5g05031 352 SUPERFAMILY Mitochondrial carrier 23 343 IPR023395 -
Trre5g05031 352 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 227 IPR018108 -
Trre5g05031 352 PRINTS Mitochondrial carrier protein signature 200 218 IPR002067 GO:0055085
Trre5g05031 352 PRINTS Mitochondrial carrier protein signature 265 287 IPR002067 GO:0055085
Trre5g05031 352 PRINTS Mitochondrial carrier protein signature 35 48 IPR002067 GO:0055085
Trre5g05031 352 PRINTS Mitochondrial carrier protein signature 138 156 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05031 Trre-Chr5 51835935 51836993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05031 13 352 Chloroplast and Mitochondria Gene Families AT5G26200 66.471 6.89e-163 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05031 K15121 - gmx:100784202 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05031 5 51835935 51836993 Trre5g05031 5 51835935 51836993 ECH