LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre5g05028	ATGACAGATAAAAATCCCATACCACCAAATTCACCAGACACCGATTTCATCAACCAATGGCCTATGGACCTTTCTGAGTACTTGAGATTTGATGATGATGATGATGATCAATGGCCAGATGATGATCCAGAGGCATTTGTTTCTGAACATGTAATCAACCAAGATAATCAACAAGCTAGTGAATTATTAGTAGGTAACTTTGGAGGAAGTGGAAGCCATCTTGAGGGTTCTTCTAGCAGAGGTGTTAGTGTAAGCAATGAAGGTGAGAAGAAGGAAGTTGGAGATAAAGTTGCATTTAAAACAAAGTCAGAGGTTGAAATTCTTGATGATGGCTTCAAGTGGAGGAAATATGGAAAGAAGATGGTGAAAAACAGCCCCAATCCAAGGAACTACTATAGGTGTTCAGTGGATGGATGTCAAGTGAAAAAGAGAGTTGAGAGAGATGTGGATGATCCAAGTTATGTTATAACAACCTATGAAGGCACACATACTCATCCAAGTTTTAACTAG	510	0.3902	MTDKNPIPPNSPDTDFINQWPMDLSEYLRFDDDDDDQWPDDDPEAFVSEHVINQDNQQASELLVGNFGGSGSHLEGSSSRGVSVSNEGEKKEVGDKVAFKTKSEVEILDDGFKWRKYGKKMVKNSPNPRNYYRCSVDGCQVKKRVERDVDDPSYVITTYEGTHTHPSFN	169

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre5g05028	169	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	66	166	IPR044810	GO:0003700
	Trre5g05028	169	MobiDBLite	consensus disorder prediction	66	84	-	-
	Trre5g05028	169	MobiDBLite	consensus disorder prediction	66	95	-	-
	Trre5g05028	169	SUPERFAMILY	WRKY DNA-binding domain	101	167	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Trre5g05028	169	Pfam	WRKY DNA -binding domain	109	166	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Trre5g05028	169	FunFam	WRKY transcription factor 57	94	168	-	-
	Trre5g05028	169	Gene3D	WRKY domain	93	167	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Trre5g05028	169	ProSiteProfiles	WRKY domain profile.	103	168	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Trre5g05028	169	SMART	WRKY_cls	108	167	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre5g05028	Trre-Chr5	51813513	51814556	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre5g05028	10	169	WRKY Transcription Factor Family	AT5G26170	50.000	2.76e-46	147

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Trre5g05028		WRKY	4.4e-25	CL0274