Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05023 ATGGAGGAAATGTCAGTTGCAGTGCCATTAAGAGCAGGTAATTCAGTGTGTGATAATCCAACCATAGCTACTACCCACATGAATGTTTCGAGACTTAAGTTGATGGCAAACGCAGAGTTAATATCAAATGCTATAACTACGATATCCGCTGATACTTATATAGGTTCTGATGAGGATCAAATTGCTGACAATCTGGACGATGAAGTTGGTGTTTCAGCAGCCACACCACCTTTGCATGAGAGAGAAGAGGAAATTCTTTTGTTGAATATGATATCTCAAAGTAGCGATGAACTTTTAGTACCAGAAATTGATGAGGATGATTCATTATCATTAGACGGGGATCCAATTATTTACAGCACTCTATCATTAACCAGTGAGAATAGTAGTGTTTGTGGAGATGAGTTCTTCAGTTCTCAAGATAATTCAAATTTTAGGACAAGGAGTTCGATGGACATAGATAAGAACATCCCGTCTGTCGAAATTGTTGCCAGGGCTGCTGTTTTCGACAAGTCAAATGTGGAGGCAGGTATTATCAGTGAACCCCTTGCTGTAGCATTGAGCCTTGGAGACGAAACAGGAGTTGAATCTGACCCGATGCCTACTACAGTTGTTCTTCATCCAATGCCTCTTGAAAAAGGGGCGAGCGGAACAGTTGGTCGGAGTGTTTTTGAATTGGATTGTACCCCACTTTGGGGATTTACATCTTTGTGTGGAAAAAGACCCGAGATGGAAGATGCTGTTGCTATTGCACCTCGGATGTTGAAAATTCCTATTCAAATGCTAAATGGTAGCAAAAAGTATGATGGAATGAGCAAGGATTTTAATCAGCAGACAGTTCATTTCTTTGGAGTCTATGATGGCCATGGTGGCGCTCAGGTAGCAGATTATTGTCGTGATCGTATGCATTTGGCCTTAGCAGAGGAAATTGAATTGCTCAAGGAAGATCTTATAATTGGAAGTACCAAGGATGATTGTCAAGATTTATGGAGAAAAGCTTTCACTACTTGTTTTATGAAAGTTGATGCTGAAGTTGGGGGGAAAGCTAATTGCGAACCTGTTGCACCAGAAACTGTTGGTTCCACTGCTGTTGTAGCTATTGTTTGTTCATCTCATATTATAGTCTCAAACTGTGGTGATTCAAGGGCGGTTCTATGTCGTGGAAAGGAACCCTTGGCTTTATCTGTGGATCATAAACCAAATCGAGATGATGAATATGCAAGAATCGAGGCAGCTGGTGGCAAGGTGATACAATGGAATGGTCATCGTGTATTTGGGGTTCTCGCCATGTCAAGGTCTATTGGCGATAGATATTTGAAGCCATGGATTATTCCCGAACCAGAAGTTATGTTCCTCCCTCGTGCAAAAGACGATGAATGTCTTATTCTGGCCAGTGATGGCTTGTGGGATGTCATGACGAATGAAGAAGCATGTGACTTAGCTCGGAGACGCATACTTCTCTGGCACAAGAAAAATGGCTCGGAGCTGTCCTCACTAAGAGGAGAGGGAATCGATCCTGCCGCACAGGCAGCTGCAGAGTACCTATCAAACCGTGCTTTGCAGAAAGGAAGCAAAGATAACATCACTGTCATCGTGGTAGATTTGAAAGCACAACGAAAATTTAAGAGTAAATCATGA 1635 0.4214 MEEMSVAVPLRAGNSVCDNPTIATTHMNVSRLKLMANAELISNAITTISADTYIGSDEDQIADNLDDEVGVSAATPPLHEREEEILLLNMISQSSDELLVPEIDEDDSLSLDGDPIIYSTLSLTSENSSVCGDEFFSSQDNSNFRTRSSMDIDKNIPSVEIVARAAVFDKSNVEAGIISEPLAVALSLGDETGVESDPMPTTVVLHPMPLEKGASGTVGRSVFELDCTPLWGFTSLCGKRPEMEDAVAIAPRMLKIPIQMLNGSKKYDGMSKDFNQQTVHFFGVYDGHGGAQVADYCRDRMHLALAEEIELLKEDLIIGSTKDDCQDLWRKAFTTCFMKVDAEVGGKANCEPVAPETVGSTAVVAIVCSSHIIVSNCGDSRAVLCRGKEPLALSVDHKPNRDDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVMFLPRAKDDECLILASDGLWDVMTNEEACDLARRRILLWHKKNGSELSSLRGEGIDPAAQAAAEYLSNRALQKGSKDNITVIVVDLKAQRKFKSKS 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05023 544 Pfam Protein phosphatase 2C 257 527 IPR001932 -
Trre5g05023 544 Gene3D - 217 544 IPR036457 -
Trre5g05023 544 ProSitePatterns PPM-type phosphatase domain signature. 281 289 IPR000222 GO:0043169
Trre5g05023 544 ProSiteProfiles PPM-type phosphatase domain profile. 230 534 IPR001932 -
Trre5g05023 544 PANTHER PROTEIN PHOSPHATASE 165 534 IPR015655 GO:0004722|GO:0006470
Trre5g05023 544 FunFam Protein phosphatase 2C 16 218 544 - -
Trre5g05023 544 CDD PP2Cc 232 534 IPR001932 -
Trre5g05023 544 SMART PP2C_4 220 532 IPR001932 -
Trre5g05023 544 SUPERFAMILY PP2C-like 226 535 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05023 Trre-Chr5 51788320 51790943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05023 1 544 PP2C-type Phosphatase Gene Family AT1G17550 49.462 1.12e-162 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05023 K14497 - gmx:102662702 778.474