LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre5g05020	ATGGTGGCTGTTGACAAAGACAAGAACAGTACTTATGCTTTTCGTTGGGCAATTAGACATCTTGATAATCCTGTCATTTTTGCTGTTCATGTTAAACACAAAAATTTACATAACCAGGGCACAAATGTTTATGAACCCGATGAAGAGGATGTAGCAAATGTTTTCAGTAACTTACGTGGAATGTGTCAACGTAAAGTTGTCACCGTGAAAGAAGCCGTAGTCGAGGATCATGATGTTGTGAAAGGATTGTTAGATTTTGCAAACAAAAATCTTGTACATAGTATTGTCATTGGTGCATCCAAGAACCCTTTACCAAGTCTTAAAAAATTTAAAGCATTTAATGATACACCAACAGCCTTGATGAAATCAGCACCGGATTATTGCTCTGTATACATAATTTCAAAATTGAAGATTGTGTCCGCTAAATCGGCGGTACGACCAATGGCGAATCAGACTACCCCAACAAAACAACTACCTGTTCAAGTATCCTTACCGAGTGAACTTGAAGGTGGAATAAGGTCAATACTACCTAGAACCGGTGACACTTATGAAGCATCAGAATCTAGGTCTTTTGACAGTGTTATTGATCCGGTAAAAGGATCGATGTGTGATAGGCCAAGGGGTGCAGGAACCAATCAATCATTGGGCAATATCGATCTACCGGGTGGTCGTGGACGACATTGGGCGTCAATGGATGAAAGAGAGATGGTGGCGCTTAGGCCAATTGTCGATGTAAATAGTCATGATTCAGATCTAATAGATTCATATGTGACAAAACCAACTTCTCATACTTCGAAAGAACTTGAAGCTGAGATGAAAAGATTGAGACGTGAACTGAAGCAAACTATGAACATGTACAGCTCAGCTTGCAAGCAAGCAATCTCAGCTAAAAATCAGGCGGATCAAATTCGTCGATGGAAATTGGAAGAGGAAAAAAAGGTTGTGGAAGTCAGGATGTCTCAAGAGGCGGCTCTTGCAATGGCGGAAAGGGAGAAGGCTAGAGCCAAAGCTGCATTGGAAGCAGCTGAGGAAGCCAAGAGGAAGGCTGAACAGGAGGCACAAAGAAGAAGAGAGGCAGAGATGAAGGCAAGGAAAGAGGCAGAAGAGAGGGATCGAGTATTAACCGCATTGGCTCAGAAGGATAATCGATATCGAAAATACACAATGCAGGAGATTGAAGTTGCTACTGAGAAATTCTCACCATCAAAGAAACTAGGTGAAGGTGGATATGGACCTGTTTTTAAAGGTCACCTTGATCATACCCCGGTTGCAATCAAGCTTTTAAATCCTGAAGCTTCTCAAGGAAGGAAGCAATTCCAACAAGAGGTTGAGGTACTAAGTTGCATTAGACATCCAAATATGGTTCTCCTTCTCGGCGCATGTCCGGAGCATGGTTGTTTGGTGTATGAATTCATGGATAACGGTAGCTTAGAAGATAGATTATTTCGAAGAAAAAACAGCAAGCCTCTATCATGGCAAAAAAGGTTCCAAATAGCAGCTGAGATTGCAACTGCACTCCTTTTTCTCCACCAAACAAAGCCAGAGCCTATCGTGCACCGAGACCTTAAACCATCAAACATTCTTTTAGACAGGAATTACGTGAGTAAAATCAGTGATGTTGGCCTCGCGAGATTAGTACCTCCTTCTGTAGCTGACAATGTGACACAATATTACATGACTTCAGCTGCTGGAACATTTTGTTATATTGATCCAGAGTATCAACAAACAGGAATATTAACAACAAAATCAGATGTTTACTCATTAGGGATAATGCTACTGCAGATAATCACAGCCAAGCCTCCAATGGGACTTACTCACCATGTTAAAAGGGCGGTCGAAAATGATCAAATCGAGGAGATTCTTGATCTTGCGGTGACTGATTGGCCACTTGAAGCAGCTCTATCATTTGCTAAATTAGCATTGAGTTGTGCAGAACTCAGCAAGAAAGATAGGCCAAGTCTTGCGACAGTTGTATTGCCAGAGCTTAACAGGTTAAGAGATCTTGGAGATACTGATAATCAAGTTTTTACTGATACTAAGACCAATAGTCATGCGCCACGCCCTCCTATGGCTACTTGA	2079	0.4156	MVAVDKDKNSTYAFRWAIRHLDNPVIFAVHVKHKNLHNQGTNVYEPDEEDVANVFSNLRGMCQRKVVTVKEAVVEDHDVVKGLLDFANKNLVHSIVIGASKNPLPSLKKFKAFNDTPTALMKSAPDYCSVYIISKLKIVSAKSAVRPMANQTTPTKQLPVQVSLPSELEGGIRSILPRTGDTYEASESRSFDSVIDPVKGSMCDRPRGAGTNQSLGNIDLPGGRGRHWASMDEREMVALRPIVDVNSHDSDLIDSYVTKPTSHTSKELEAEMKRLRRELKQTMNMYSSACKQAISAKNQADQIRRWKLEEEKKVVEVRMSQEAALAMAEREKARAKAALEAAEEAKRKAEQEAQRRREAEMKARKEAEERDRVLTALAQKDNRYRKYTMQEIEVATEKFSPSKKLGEGGYGPVFKGHLDHTPVAIKLLNPEASQGRKQFQQEVEVLSCIRHPNMVLLLGACPEHGCLVYEFMDNGSLEDRLFRRKNSKPLSWQKRFQIAAEIATALLFLHQTKPEPIVHRDLKPSNILLDRNYVSKISDVGLARLVPPSVADNVTQYYMTSAAGTFCYIDPEYQQTGILTTKSDVYSLGIMLLQIITAKPPMGLTHHVKRAVENDQIEEILDLAVTDWPLEAALSFAKLALSCAELSKKDRPSLATVVLPELNRLRDLGDTDNQVFTDTKTNSHAPRPPMAT	692

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre5g05020	692	MobiDBLite	consensus disorder prediction	670	692	-	-
	Trre5g05020	692	Coils	Coil	318	370	-	-
	Trre5g05020	692	Pfam	Protein tyrosine and serine/threonine kinase	402	658	IPR001245	GO:0004672\|GO:0006468
	Trre5g05020	692	Pfam	Universal stress protein family	1	124	IPR006016	-
	Trre5g05020	692	SMART	serkin_6	399	662	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre5g05020	692	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	371	471	-	-
	Trre5g05020	692	ProSiteProfiles	Protein kinase domain profile.	399	662	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre5g05020	692	Gene3D	HUPs	1	131	IPR014729	-
	Trre5g05020	692	Coils	Coil	265	292	-	-
	Trre5g05020	692	MobiDBLite	consensus disorder prediction	345	367	-	-
	Trre5g05020	692	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	517	529	IPR008271	GO:0004672\|GO:0006468
	Trre5g05020	692	CDD	STKc_IRAK	405	665	-	-
	Trre5g05020	692	CDD	STK_N	2	135	-	-
	Trre5g05020	692	SUPERFAMILY	Protein kinase-like (PK-like)	383	658	IPR011009	-
	Trre5g05020	692	PANTHER	OS02G0152300 PROTEIN	2	671	-	-
	Trre5g05020	692	FunFam	U-box domain-containing protein 51	472	672	-	-
	Trre5g05020	692	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	1	100	-	-
	Trre5g05020	692	Gene3D	Phosphorylase Kinase; domain 1	377	471	-	-
	Trre5g05020	692	Gene3D	Transferase(Phosphotransferase) domain 1	472	684	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre5g05020	Trre-Chr5	51759951	51763061	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre5g05020	71	674	Receptor kinase-like Gene Family	AT5G12000	56.822	0.0	672

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Trre5g05020		PK_Tyr_Ser-Thr	1.6e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre5g05020	-		-	psat:127087910	996.882