LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre5g05019	ATGTCTCTTCAACAGCCACAACAAAACATAACAATGGTGGCTGTTGACAAAGACAAGAACAGTACTTATGCTTTTCGTTGGGCAATTAGACATCTTGATAATCCTGTCATTTTTGCTGTTCATGTTAAACACAAAAATTTACATAACCAGGGCACAAATGTTTATGAACCCGATGAAGAGGATGTAGCAAATGTTTTCAGTAACTTACGTGGAATGTGTCAACGTAAAGTTGTCACCGTGAAAGAAGCCGTAGTCGAGGATCATGATGTTGTGAAAGGATTGTTAGATTTTGCAAACAAAAATCTTGTACATAGTATTGTCATTGGTGCATCCAAGAACCCTTTACCAAGTCTTAAAAAATTTAAAGCATTTAATGATACACCAACAGCCTTGATGAAATCAGCACCGGATTATTGCTCTGTATACATAATTTCAAAATTGAAGATTGTGTCCGCTAAATCGGCGGTACGACCAATGGCGAATCAGACTACCCCAACAAAACAACTACCTGTTCAAGTATCCTTACCGAGTGAACTTGAAGGTGGAATAAGGTCAATACTACCTAGAACCGGTGACACTTATGAAGCATCAGAATCTAGGTCTTTTGACAGTGTTATTGATCCGGTAAAAGGATCGATGTGTGATAGGCCAAGGGGTGCAGGAACCAATCAATCATTGGGCAATATCGATCTACCGGGTGGTCGTGGACGACATTGGGCGTCAATGGATGAAAGAGAGATGGTGGCGCTTAGGCCAATTGTCGATGTAAATAGTCATGATTCAGATCTAATAGATTCATATGTGACAAAACCAACTTCTCATACTTCGAAAGAACTTGAAGCTGAGATGAAAAGATTGAGACGTGAACTGAAGCAAACTATGAACATGTACAGCTCAGCTTGCAAGCAAGCAATCTCAGCTAAAAATCAGGCGGATCAAATTCGTCGATGGAAATTGGAAGAGGAAAAAAAGGTTGTGGAAGTCAGGATGTCTCAAGAGGCGGCTCTTGCAATGGCGGAAAGGGAGAAGGCTAGAGCCAAAGCTGCATTGGAAGCAGCTGAGGAAGCCAAGAGGAAGGCTGAACAGGAGGCACAAAGAAGAAGAGAGGCAGAGATGAAGGCAAGGAAAGAGGCAGAAGAGAGGGATCGAGTATTAACCGCATTGGCTCAGAAGGATAATCGATATCGAAAATACACAATGCAGGAGATTGAAGTTGCTACTGAGAAATTCTCACCATCAAAGAAACTAGGTGAAGGTGGATATGGACCTGTTTTTAAAGGTCACCTTGATCATACCCCGGTTGCAATCAAGCTTTTAAATCCTGAAGCTTCTCAAGGAAGGAAGCAATTCCAACAAGAGGTTGAGGTACTAAGTTGCATTAGACATCCAAATATGGTTCTCCTTCTCGGCGCATGTCCGGAGCATGGTTGTTTGGTGTATGAATTCATGGATAACGGTAGCTTAGAAGATAGATTATTTCGAAGAAAAAACAGCAAGCCTCTATCATGGCAAAAAAGGTTCCAAATAGCAGCTGAGATTGCAACTGCACTCCTTTTTCTCCACCAAACAAAGCCAGAGCCTATCGTGCACCGAGACCTTAAACCATCAAACATTCTTTTAGACAGGAATTACGTGAGTAAAATCAGTGATGTTGGCCTCGCGAGATTAGTACCTCCTTCTGTAGCTGACAATGTGACACAATATTACATGACTTCAGCTGCTGGAACATTTTGTTATATTGATCCAGAGTATCAACAAACAGGAATATTAACAACAAAATCAGATGTTTACTCATTAGGGATAATGCTACTGCAGATAATCACAGCCAAGCCTCCAATGGGACTTACTCACCATGTTAAAAGGGCGGTCGAAAATGATCAAATCGAGGAGATTCTTGATCTTGCGGTGACTGATTGGCCACTTGAAGCAGCTCTATCATTTGCTAAATTAGCATTGAGTTGTGCAGAACTCAGCAAGAAAGATAGGCCAAGTCTTGCGACAGTTGTATTGCCAGAGCTTAACAGGTTAAGAGATCTTGGAGATACTGATAATCAAGTTTTTACTGATACTAAGACCAATAGTCATGCGCCACGCCCTCCTATGGCTACTTGA	2112	0.4148	MSLQQPQQNITMVAVDKDKNSTYAFRWAIRHLDNPVIFAVHVKHKNLHNQGTNVYEPDEEDVANVFSNLRGMCQRKVVTVKEAVVEDHDVVKGLLDFANKNLVHSIVIGASKNPLPSLKKFKAFNDTPTALMKSAPDYCSVYIISKLKIVSAKSAVRPMANQTTPTKQLPVQVSLPSELEGGIRSILPRTGDTYEASESRSFDSVIDPVKGSMCDRPRGAGTNQSLGNIDLPGGRGRHWASMDEREMVALRPIVDVNSHDSDLIDSYVTKPTSHTSKELEAEMKRLRRELKQTMNMYSSACKQAISAKNQADQIRRWKLEEEKKVVEVRMSQEAALAMAEREKARAKAALEAAEEAKRKAEQEAQRRREAEMKARKEAEERDRVLTALAQKDNRYRKYTMQEIEVATEKFSPSKKLGEGGYGPVFKGHLDHTPVAIKLLNPEASQGRKQFQQEVEVLSCIRHPNMVLLLGACPEHGCLVYEFMDNGSLEDRLFRRKNSKPLSWQKRFQIAAEIATALLFLHQTKPEPIVHRDLKPSNILLDRNYVSKISDVGLARLVPPSVADNVTQYYMTSAAGTFCYIDPEYQQTGILTTKSDVYSLGIMLLQIITAKPPMGLTHHVKRAVENDQIEEILDLAVTDWPLEAALSFAKLALSCAELSKKDRPSLATVVLPELNRLRDLGDTDNQVFTDTKTNSHAPRPPMAT	703

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre5g05019	703	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	12	111	-	-
	Trre5g05019	703	Pfam	Universal stress protein family	12	135	IPR006016	-
	Trre5g05019	703	MobiDBLite	consensus disorder prediction	356	378	-	-
	Trre5g05019	703	FunFam	U-box domain-containing protein 51	483	683	-	-
	Trre5g05019	703	Gene3D	Transferase(Phosphotransferase) domain 1	483	695	-	-
	Trre5g05019	703	CDD	STK_N	13	146	-	-
	Trre5g05019	703	Coils	Coil	276	303	-	-
	Trre5g05019	703	CDD	STKc_IRAK	416	676	-	-
	Trre5g05019	703	PANTHER	OS02G0152300 PROTEIN	11	682	-	-
	Trre5g05019	703	SMART	serkin_6	410	673	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre5g05019	703	SUPERFAMILY	Protein kinase-like (PK-like)	394	669	IPR011009	-
	Trre5g05019	703	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	528	540	IPR008271	GO:0004672\|GO:0006468
	Trre5g05019	703	ProSiteProfiles	Protein kinase domain profile.	410	673	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre5g05019	703	Pfam	Protein tyrosine and serine/threonine kinase	413	669	IPR001245	GO:0004672\|GO:0006468
	Trre5g05019	703	Gene3D	Phosphorylase Kinase; domain 1	388	482	-	-
	Trre5g05019	703	Coils	Coil	329	381	-	-
	Trre5g05019	703	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	382	482	-	-
	Trre5g05019	703	Gene3D	HUPs	1	142	IPR014729	-
	Trre5g05019	703	MobiDBLite	consensus disorder prediction	681	703	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre5g05019	Trre-Chr5	51759951	51763094	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre5g05019	82	685	Receptor kinase-like Gene Family	AT5G12000	56.822	0.0	672

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Trre5g05019		PK_Tyr_Ser-Thr	1.6e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre5g05019	-		-	psat:127087910	1009.98