Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05015 ATGGGTGCATCAGGAAAATGGATGAAAGCATTAATCGGATTCAAGAAACCAGACAAAGATGAACATGTGAAAGAAGGAGGTAAGAGTAAGAAATGGAGATTATGGAGAAGTTCATCAGGTGATAACACTTCATGGAAAGGTTTCAAAACTAACCCTCACAAAGCAGCTTCTGAAGGTTCTGAATCACCAACTGCAGCAGAAGCTTTCACCGCCGCAGTAGCCACCGTTGTGAGAGCTCAACCTAAGGATTTTAGACTTGTTAGACAAGAATGGGCTGCTATAAGAATCCAAACTACTTTTCGCGGCTTCTTGGCAAGAAGGGCTTTACGGGCTTTGAAGGCGGTGGTGAGGATTCAAGCTCTTGTCAGGGGTAGACAAGTGAGGAAGCAAGCTGCAGTGACATTGAGGTGCATGCAGGCCTTGGTTCGTGTTCAAGCTCGAGTAAGAGCTCGTCGTGTGAGGATGTCCATGGAGGGACAAGCCGTGCAGAATATGCTCAATGAGCGACGAAGCAAGCTTGAACTTTTGAAGGAAGCCGAGGAAGGGTGGTGTGATAGCATTGGAACATTGGAAGATGTTAAATCAAAAATACAAATGAGGCAAGAAGGAGCTTTCAAAAGAGAGAGGGCTCTTGCATACTCACTTGCTCAGAAGCAATGCAGGCCAGCCTCAAGCACTAATTCACGAACAAACGCCTCATTTTCATCTCTCAAGAATCACGAGATGAACAAAGCTAATGGGGGATGGAGTTGGTTGGAAAGATGGATGGCAGCCAAGCCTTGGGAGACTAGATTGATGGAACAGTCTCATGCCGAAAGCTTAGATAAAACCCCACCACCACCTCCAAAGAAGTTTGTGGAATCCTTTGTAAGCTCTAATTCGAAACCATGCTCGGTCAAAATCAAGAAGAACAACGTCACAACAAGGATTTCTGCTAAGCCTCCACTTCACATTGGACAAGCTACTCGTTCGTCATCAAGTCCAAGTTCCGAGTTTCGGTATGACGAGAGTTCTGCATCATCTTCTATTTGTACATCCACGACACCAATGTCAGGGAACACTTGTGAAAGGACCGAGGATAGTAGTAGCAGTTCTCGGCCAAATTACATGAACCTGACTCAGTCAACAAAGGCAAAGCTAAAAACAGGTTATCCAATGTATAACAGAGCTCAAAGGCAACAATCAATGGATGAGTTTCAATTCATGAAAAGGGCTGCGGTTTTCTCAAATGGAGATTCTAAAAGCATAGCTGCTTCTGATCATTCACTCAACTTTTCTAGGCCACTTCACCTACCAACTCACTCGGAAAAGAGCTTGGTTAGGCCACGGTGA 1332 0.4497 MGASGKWMKALIGFKKPDKDEHVKEGGKSKKWRLWRSSSGDNTSWKGFKTNPHKAASEGSESPTAAEAFTAAVATVVRAQPKDFRLVRQEWAAIRIQTTFRGFLARRALRALKAVVRIQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSMEGQAVQNMLNERRSKLELLKEAEEGWCDSIGTLEDVKSKIQMRQEGAFKRERALAYSLAQKQCRPASSTNSRTNASFSSLKNHEMNKANGGWSWLERWMAAKPWETRLMEQSHAESLDKTPPPPPKKFVESFVSSNSKPCSVKIKKNNVTTRISAKPPLHIGQATRSSSSPSSEFRYDESSASSSICTSTTPMSGNTCERTEDSSSSSRPNYMNLTQSTKAKLKTGYPMYNRAQRQQSMDEFQFMKRAAVFSNGDSKSIAASDHSLNFSRPLHLPTHSEKSLVRPR 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05015 443 MobiDBLite consensus disorder prediction 18 62 - -
Trre5g05015 443 ProSiteProfiles IQ motif profile. 113 140 IPR000048 GO:0005515
Trre5g05015 443 MobiDBLite consensus disorder prediction 18 35 - -
Trre5g05015 443 Pfam IQ calmodulin-binding motif 113 130 IPR000048 GO:0005515
Trre5g05015 443 Pfam IQ calmodulin-binding motif 91 110 IPR000048 GO:0005515
Trre5g05015 443 SMART iq_5 88 110 IPR000048 GO:0005515
Trre5g05015 443 SMART iq_5 111 132 IPR000048 GO:0005515
Trre5g05015 443 MobiDBLite consensus disorder prediction 36 58 - -
Trre5g05015 443 ProSiteProfiles IQ motif profile. 89 117 IPR000048 GO:0005515
Trre5g05015 443 MobiDBLite consensus disorder prediction 305 370 - -
Trre5g05015 443 MobiDBLite consensus disorder prediction 318 370 - -
Trre5g05015 443 PANTHER IQ-DOMAIN 5-RELATED 1 412 - -
Trre5g05015 443 Gene3D - 87 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05015 Trre-Chr5 51713131 51715340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05015 1 437 IQD Protein Family AT2G26180 61.136 1.41e-151 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05015 - - gmx:100799714 637.491