Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05011 ATGAGCGGTGAGGATGAAGACCAAGAAGAAAAAAGGTTGAATTTGAAGAAAAATTCTTCTCGGTTCAATAATTTCCAACGCGATCTTATGGCTGGTGCTGTTATGGGTGGTGCTGTTCATACAATTGTGGCTCCAATTGAAAGAGCTAAGCTATTGTTGCAGACCCAAGAAAGTAATTTGGCTATTGTTGCGAGTGGTCGTCGAAAATTCAAAGGAATGTTTGATTGTATAATTCGTACTGTTAGGGAAGAAGGTATTATCTCTTTGTGGCGTGGTAATGGTAGCAGTGTTCTTCGTTATTATCCTTCTGTTGCTCTCAATTTCTCTCTTAAGGATCTTTACAAAAGCATACTAAGGGGTGGGAACTCTAATTCTGATAATCTTTTCTCTGGTGCATCTGCTAATTTTATTGCCGGGGCTGGAGCAGGTTGTACATCGCTTATCTTGGTATACCCCCTTGATATCGCACACACCCGCCTAGCCGCTGACATCGGAAGGACAGAAATGCGCCAATTCCGAGGCATTTACCATTTCTTAGCCACTATTTTCGAAAAAGACGGTGTTCGTGGAATTTACAGGGGCCTTCCTGCATCACTACATGGTATGGTGATACATAGAGGGCTTTACTTTGGAGGGTTTGATACCATAAAAGAGATGTTGTCTGAAGAATCTAAACCCGAATTGGTATTGTGGAAGCGATGGATGGTCGCTCAAGCAGTTACAACCTCCGCCGGTCTGATTTCATATCCACTAGACACGGTTCGACGGAGGATGATGATGCAGTCTGGCATGGAACATCCGGTGTACAATAGCACCCTCGACTGCTGGAGGAAAATCTATCGGACAGAGGGATTGGTTTCATTTTACCGTGGCGCAGTTTCAAATGTGTTTAGGAGCACTGGAGCTGCAGCTATCTTAGTGTTGTATGATGAGGTCAAGAAATTTATGAACTGGGGAAGATTGTAA 966 0.4348 MSGEDEDQEEKRLNLKKNSSRFNNFQRDLMAGAVMGGAVHTIVAPIERAKLLLQTQESNLAIVASGRRKFKGMFDCIIRTVREEGIISLWRGNGSSVLRYYPSVALNFSLKDLYKSILRGGNSNSDNLFSGASANFIAGAGAGCTSLILVYPLDIAHTRLAADIGRTEMRQFRGIYHFLATIFEKDGVRGIYRGLPASLHGMVIHRGLYFGGFDTIKEMLSEESKPELVLWKRWMVAQAVTTSAGLISYPLDTVRRRMMMQSGMEHPVYNSTLDCWRKIYRTEGLVSFYRGAVSNVFRSTGAAAILVLYDEVKKFMNWGRL 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05011 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 23 117 IPR018108 -
Trre5g05011 321 PRINTS Mitochondrial carrier protein signature 92 112 IPR002067 GO:0055085
Trre5g05011 321 PRINTS Mitochondrial carrier protein signature 237 259 IPR002067 GO:0055085
Trre5g05011 321 PRINTS Mitochondrial carrier protein signature 28 41 IPR002067 GO:0055085
Trre5g05011 321 PRINTS Mitochondrial carrier protein signature 145 163 IPR002067 GO:0055085
Trre5g05011 321 PRINTS Mitochondrial carrier protein signature 41 55 IPR002067 GO:0055085
Trre5g05011 321 PRINTS Mitochondrial carrier protein signature 192 210 IPR002067 GO:0055085
Trre5g05011 321 PRINTS Adenine nucleotide translocator signature 103 115 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Trre5g05011 321 PRINTS Adenine nucleotide translocator signature 130 143 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Trre5g05011 321 PRINTS Adenine nucleotide translocator signature 70 91 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Trre5g05011 321 PRINTS Adenine nucleotide translocator signature 25 37 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Trre5g05011 321 PRINTS Adenine nucleotide translocator signature 233 249 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Trre5g05011 321 SUPERFAMILY Mitochondrial carrier 22 311 IPR023395 -
Trre5g05011 321 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 14 318 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Trre5g05011 321 Gene3D Mitochondrial carrier domain 21 316 IPR023395 -
Trre5g05011 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 130 219 IPR018108 -
Trre5g05011 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 232 315 IPR018108 -
Trre5g05011 321 FunFam probable ADP,ATP carrier protein At5g56450 27 318 - -
Trre5g05011 321 Pfam Mitochondrial carrier protein 24 119 IPR018108 -
Trre5g05011 321 Pfam Mitochondrial carrier protein 230 317 IPR018108 -
Trre5g05011 321 Pfam Mitochondrial carrier protein 133 222 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05011 Trre-Chr5 51663178 51667863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05011 22 313 Antiporters AT5G13490 39.933 5.29e-64 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05011 K05863 - gmx:100807764 557.755