Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05002 ATGAGAATAGCTAGGAAATGCTCATATTGTGGAAATTTAGGCCATAATTCAAGGACTTGCAATAACAGTCTCAGTCAAGACCAATTTCATCTTTATTCTTCTTCACCTTCATATTTTGCTACTAAATGGAGTTTCAGAAAGAACTACCTGCTATCATCACAATCATATTCCTCTTTATCAAAATCATATTCCTTGCCTACACTGTTTGGTACAAATGAAAATTCAGATAGTTACTTAGAAAGTGGACATATATCAACCATTGGATCCAATAAAAAAGGTATGCCATGGACTGAGGAGGAGCACAGTATGTTTCTTAGAGGACTTGAGAAGCTTGGGAAGGGTAACTGGAGAGGTATATCTAGAGATTTTGTGACAACAAGAACACCAACTCAGGTGGCAAGTCATGCACAAAAACATTTTCTTCGTCAGTCTCAGAATAGCTTCATCAATAAAAGAAAACATCTTAGCCTTCTTAAGGTGGAGTGTGAGAATAAAACTAGATTTGAAGCATTTTCTGAACCAAGTGAAGCATTTGGTACATTATCAGGAATAACTAATTTGACAAAAAATGATATCAGCTACAAAAGCCAACTAAGTGGAAGTAGAAATTTTCTTTCTCATCCTCAATATTCAGTGTTGAAATTGCCTAACTCTTCAACTTCAACAAATTGTACTCCTTGGAGTGCAGCACCTGATTTAGAACTCAAGCTTGCAACTCCTGTGCCATTAGAGATAACAGAGACATGCTCTGTAGGGCCTTTAAGCTATAAACATTATTGA 780 0.3615 MRIARKCSYCGNLGHNSRTCNNSLSQDQFHLYSSSPSYFATKWSFRKNYLLSSQSYSSLSKSYSLPTLFGTNENSDSYLESGHISTIGSNKKGMPWTEEEHSMFLRGLEKLGKGNWRGISRDFVTTRTPTQVASHAQKHFLRQSQNSFINKRKHLSLLKVECENKTRFEAFSEPSEAFGTLSGITNLTKNDISYKSQLSGSRNFLSHPQYSVLKLPNSSTSTNCTPWSAAPDLELKLATPVPLEITETCSVGPLSYKHY 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05002 259 SMART sant 92 142 IPR001005 -
Trre5g05002 259 CDD SANT 95 140 IPR001005 -
Trre5g05002 259 NCBIfam myb-like DNA-binding domain, SHAQKYF class 91 143 IPR006447 GO:0003677
Trre5g05002 259 ProSiteProfiles Myb-like domain profile. 88 140 IPR001005 -
Trre5g05002 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 144 IPR017930 -
Trre5g05002 259 PANTHER TRANSCRIPTION FACTOR KUA1 5 185 - -
Trre5g05002 259 SUPERFAMILY Homeodomain-like 89 144 IPR009057 -
Trre5g05002 259 FunFam transcription factor MYB1R1 94 145 - -
Trre5g05002 259 Gene3D - 94 145 - -
Trre5g05002 259 ProSiteProfiles SANT domain profile. 91 144 IPR017884 -
Trre5g05002 259 Pfam Myb-like DNA-binding domain 94 139 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05002 Trre-Chr5 51597453 51599036 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre5g05002 Myb_DNA-binding 7.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05002 - - mtr:11430636 323.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05002 5 51597453 51599036 Trre5g05002 5 51597453 51599036 ECH