Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04993 ATGGAAGAAGAGCAAAACACAACCAATGCAACATGGACCAATAGAACTAGTGGCAACAACAATGGTTTGGAAGTTGATTGGTACATGAACAATATACCGCCTCATAGTGAAGAATTTATCCCAAATCTTCAAAGTCACACTCAACAACAAAACAATTTTTATCCATTAGATCCAAACACTTTTGGTCTTGTGCAACCTCTAGGTTCCTCTTCTTTCTTACCACCACCTAAATCCAACGACAGCAACATTAGCACTACCACCACCACCACAGTCAACAACAATCCATTTGGTAGTGTTTTCAATTTGGAATCCCAAAGTGGTTTCCTAACTCCATTTCAAGGAAATCAAATAGACTTATCAGCCCAAACCAACTCATCGGTCAAGTTTCCTATGACTGATGCAGTTGGATTGGGCTCAATAGGTTTAGAAGGAGAAAGTTTCTTTGGCGGTCCCGGACCTTCAAATTCGTCGTTTTTGAGTAAGGCTGAGATCTCGGGGCCTCTCGACGATCTTTCAGCAAATTTTGTGCCACCCACGAATGAGATATGTTCTGACATAGAAAAGACAAATAAGTTTGAATCATTGCCGATTTCGCAATTTGCCTCAACATGGCTGAAGGAATTTGGGAAGATGAGGGAGAAAGAGGAAAATGAGGAGGTTGAGGGAGGATTGAATTATGAATCTAATGAGGTGGTTGATGTTGGGAATATGGGGAATAATGGTGGAAATAATTATAATGCAAATAACAATGATGGTGGCAACAATAATGATGGTGATGAAAATCGTCGTGATGCTGAAGGGGACCGAAAAGGGAAGAAGAAGGAAAGGACAACAAAAAGTCTCATAGCTGAGAGACGGAGAAGGAAAAAACTTTGTGATAGAATGCACATGCTTCGTTCTATTGTGCCAAATATAAGTAAGATGGATAAAGCTTCAATACTTGGGGATGCTGCTGACTACATGAAAGAGTTGCAACAACAAATTAATGATCTTCAAAGTGAATTAGAGTCAAGCTCTCCTGGATCATCTCTGCCACCGCTTGTTCCAGTCAAAGAGGAATTGTGTCATAGCAATGTGTCAAGCCCTAAAAACCAATCAACAAAGGTAGAGGTTAGGGAAAGTGAAGGAGGAACTATTGACATCCACGTGTCTTGCACCCACAAATCAGATATTTTGTTTTCGACTATGAAGGCATTGGATAGCCTTGGACTGGATGTACATCAAGCTGTCATAAATTGTTTCAATGGTTTTTCTATTGATGTGTTCAAAGCTAAGCAATACAGAGAAGGCCAGAAATTGCTCCCTGAGCAAATTAAAGCAGTATTGTTGAACACATTGAGTTTCCATGGCATGATGTGA 1359 0.4018 MEEEQNTTNATWTNRTSGNNNGLEVDWYMNNIPPHSEEFIPNLQSHTQQQNNFYPLDPNTFGLVQPLGSSSFLPPPKSNDSNISTTTTTTVNNNPFGSVFNLESQSGFLTPFQGNQIDLSAQTNSSVKFPMTDAVGLGSIGLEGESFFGGPGPSNSSFLSKAEISGPLDDLSANFVPPTNEICSDIEKTNKFESLPISQFASTWLKEFGKMREKEENEEVEGGLNYESNEVVDVGNMGNNGGNNYNANNNDGGNNNDGDENRRDAEGDRKGKKKERTTKSLIAERRRRKKLCDRMHMLRSIVPNISKMDKASILGDAADYMKELQQQINDLQSELESSSPGSSLPPLVPVKEELCHSNVSSPKNQSTKVEVRESEGGTIDIHVSCTHKSDILFSTMKALDSLGLDVHQAVINCFNGFSIDVFKAKQYREGQKLLPEQIKAVLLNTLSFHGMM 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04993 452 SMART finulus 281 330 IPR011598 GO:0046983
Trre5g04993 452 MobiDBLite consensus disorder prediction 1 21 - -
Trre5g04993 452 Coils Coil 314 334 - -
Trre5g04993 452 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 141 445 - -
Trre5g04993 452 MobiDBLite consensus disorder prediction 216 283 - -
Trre5g04993 452 Pfam Helix-loop-helix DNA-binding domain 282 325 IPR011598 GO:0046983
Trre5g04993 452 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 272 339 IPR036638 GO:0046983
Trre5g04993 452 MobiDBLite consensus disorder prediction 232 255 - -
Trre5g04993 452 CDD ACT_UUR-ACR-like 381 441 - -
Trre5g04993 452 Gene3D - 265 339 IPR036638 GO:0046983
Trre5g04993 452 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 275 324 IPR011598 GO:0046983
Trre5g04993 452 MobiDBLite consensus disorder prediction 256 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04993 Trre-Chr5 51503191 51506487 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04993 23 425 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 35.281 1.00e-59 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre5g04993 HLH 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04993 - - tpra:123895756 621.698