Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04992 ATGGAAGAAGAGCAAAACACAACCAATGCAACATGGACCAATAGAACTAGTGGCAACAACAATGGTTTGGAAGTTGATTGGTACATGAACAATATACCGCCTCATAGTGAAGAATTTATCCCAAATCTTCAAAGTCACACTCAACAACAAAACAATTTTTATCCATTAGATCCAAACACTTTTGGTCTTGTGCAACCTCTAGGTTCCTCTTCTTTCTTACCACCACCTAAATCCAACGACAGCAACATTAGCACTACCACCACCACCACAGTCAACAACAATCCATTTGGTAGTGTTTTCAATTTGGAATCCCAAAGTGGTTTCCTAACTCCATTTCAAGGAAATCAAATAGACTTATCAGCCCAAACCAACTCATCGGTCAAGTTTCCTATGACTGATGCAGTTGGATTGGGCTCAATAGGTTTAGAAGGAGAAAGTTTCTTTGGCGGTCCCGGACCTTCAAATTCGTCGTTTTTGAGTAAGGCTGAGATCTCGGGGCCTCTCGACGATCTTTCAGCAAATTTTGTGCCACCCACGAATGAGATATGTTCTGACATAGAAAAGACAAATAAGTTTGAATCATTGCCGATTTCGCAATTTGCCTCAACATGGCTGAAGGAATTTGGGAAGATGAGGGAGAAAGAGGAAAATGAGGAGGTTGAGGGAGGATTGAATTATGAATCTAATGAGGTGGTTGATGTTGGGAATATGGGGAATAATGGTGGAAATAATTATAATGCAAATAACAATGATGGTGGCAACAATAATGATGGTGATGAAAATCGTCGTGATGCTGAAGGGGACCGAAAAGGGAAGAAGAAGGAAAGGACAACAAAAAGTCTCATAGCTGAGAGACGGAGAAGGAAAAAACTTTGTGATAGAATGCACATGCTTCGTTCTATTATGGATAAAGCTTCAATACTTGGGGATGCTGCTGACTACATGAAAGAGTTGCAACAACAAATTAATGATCTTCAAAGTGAATTAGAGTCAAGCTCTCCTGGATCATCTCTGCCACCGCTTGTTCCAGTCAAAGAGGAATTGTGTCATAGCAATGTGTCAAGCCCTAAAAACCAATCAACAAAGGTAGAGGTTAGGGAAAGTGAAGGAGGAACTATTGACATCCACGTGTCTTGCACCCACAAATCAGATATTTTGTTTTCGACTATGAAGGCATTGGATAGCCTTGGACTGGATGTACATCAAGCTGTCATAAATTGTTTCAATGGTTTTTCTATTGATGTGTTCAAAGCTAAGCAATACAGAGAAGGCCAGAAATTGCTCCCTGAGCAAATTAAAGCAGTATTGTTGAACACATTGAGTTTCCATGGCATGATGTGA 1341 0.4027 MEEEQNTTNATWTNRTSGNNNGLEVDWYMNNIPPHSEEFIPNLQSHTQQQNNFYPLDPNTFGLVQPLGSSSFLPPPKSNDSNISTTTTTTVNNNPFGSVFNLESQSGFLTPFQGNQIDLSAQTNSSVKFPMTDAVGLGSIGLEGESFFGGPGPSNSSFLSKAEISGPLDDLSANFVPPTNEICSDIEKTNKFESLPISQFASTWLKEFGKMREKEENEEVEGGLNYESNEVVDVGNMGNNGGNNYNANNNDGGNNNDGDENRRDAEGDRKGKKKERTTKSLIAERRRRKKLCDRMHMLRSIMDKASILGDAADYMKELQQQINDLQSELESSSPGSSLPPLVPVKEELCHSNVSSPKNQSTKVEVRESEGGTIDIHVSCTHKSDILFSTMKALDSLGLDVHQAVINCFNGFSIDVFKAKQYREGQKLLPEQIKAVLLNTLSFHGMM 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04992 446 MobiDBLite consensus disorder prediction 1 21 - -
Trre5g04992 446 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 272 333 IPR036638 GO:0046983
Trre5g04992 446 Coils Coil 308 328 - -
Trre5g04992 446 SMART finulus 281 324 IPR011598 GO:0046983
Trre5g04992 446 MobiDBLite consensus disorder prediction 216 283 - -
Trre5g04992 446 Gene3D - 271 334 IPR036638 GO:0046983
Trre5g04992 446 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 141 439 - -
Trre5g04992 446 MobiDBLite consensus disorder prediction 232 255 - -
Trre5g04992 446 CDD ACT_UUR-ACR-like 375 435 - -
Trre5g04992 446 MobiDBLite consensus disorder prediction 256 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04992 Trre-Chr5 51503191 51506487 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04992 23 419 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 34.199 9.96e-54 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04992 - - tpra:123895756 603.594