Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04991 ATGGACAAAGACAAAGATATGCTACATTGGTTGAAACAACAAATGGAAGAAGAGCAAAACACAACCAATGCAACATGGACCAATAGAACTAGTGGCAACAACAATGGTTTGGAAGTTGATTGGTACATGAACAATATACCGCCTCATAGTGAAGAATTTATCCCAAATCTTCAAAGTCACACTCAACAACAAAACAATTTTTATCCATTAGATCCAAACACTTTTGGTCTTGTGCAACCTCTAGGTTCCTCTTCTTTCTTACCACCACCTAAATCCAACGACAGCAACATTAGCACTACCACCACCACCACAGTCAACAACAATCCATTTGGTAGTGTTTTCAATTTGGAATCCCAAAGTGGTTTCCTAACTCCATTTCAAGGAAATCAAATAGACTTATCAGCCCAAACCAACTCATCGGTCAAGTTTCCTATGACTGATGCAGTTGGATTGGGCTCAATAGGTTTAGAAGGAGAAAGTTTCTTTGGCGGTCCCGGACCTTCAAATTCGTCGTTTTTGAGTAAGGCTGAGATCTCGGGGCCTCTCGACGATCTTTCAGCAAATTTTGTGCCACCCACGAATGAGATATGTTCTGACATAGAAAAGACAAATAAGTTTGAATCATTGCCGATTTCGCAATTTGCCTCAACATGGCTGAAGGAATTTGGGAAGATGAGGGAGAAAGAGGAAAATGAGGAGGTTGAGGGAGGATTGAATTATGAATCTAATGAGGTGGTTGATGTTGGGAATATGGGGAATAATGGTGGAAATAATTATAATGCAAATAACAATGATGGTGGCAACAATAATGATGGTGATGAAAATCGTCGTGATGCTGAAGGGGACCGAAAAGGGAAGAAGAAGGAAAGGACAACAAAAAGTCTCATAGCTGAGAGACGGAGAAGGAAAAAACTTTGTGATAGAATGCACATGCTTCGTTCTATTGTGCCAAATATAAGTAAGATGGATAAAGCTTCAATACTTGGGGATGCTGCTGACTACATGAAAGAGTTGCAACAACAAATTAATGATCTTCAAAGTGAATTAGAGTCAAGCTCTCCTGGATCATCTCTGCCACCGCTTGTTCCAGTCAAAGAGGAATTGTGTCATAGCAATGTGTCAAGCCCTAAAAACCAATCAACAAAGGTAGAGGTTAGGGAAAGTGAAGGAGGAACTATTGACATCCACGTGTCTTGCACCCACAAATCAGATATTTTGTTTTCGACTATGAAGGCATTGGATAGCCTTGGACTGGATGTACATCAAGCTGTCATAAATTGTTTCAATGGTTTTTCTATTGATGTGTTCAAAGCTAAGCAATACAGAGAAGGCCAGAAATTGCTCCCTGAGCAAATTAAAGCAGTATTGTTGAACACATTGAGTTTCCATGGCATGATGTGA 1401 0.3997 MDKDKDMLHWLKQQMEEEQNTTNATWTNRTSGNNNGLEVDWYMNNIPPHSEEFIPNLQSHTQQQNNFYPLDPNTFGLVQPLGSSSFLPPPKSNDSNISTTTTTTVNNNPFGSVFNLESQSGFLTPFQGNQIDLSAQTNSSVKFPMTDAVGLGSIGLEGESFFGGPGPSNSSFLSKAEISGPLDDLSANFVPPTNEICSDIEKTNKFESLPISQFASTWLKEFGKMREKEENEEVEGGLNYESNEVVDVGNMGNNGGNNYNANNNDGGNNNDGDENRRDAEGDRKGKKKERTTKSLIAERRRRKKLCDRMHMLRSIVPNISKMDKASILGDAADYMKELQQQINDLQSELESSSPGSSLPPLVPVKEELCHSNVSSPKNQSTKVEVRESEGGTIDIHVSCTHKSDILFSTMKALDSLGLDVHQAVINCFNGFSIDVFKAKQYREGQKLLPEQIKAVLLNTLSFHGMM 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04991 466 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 286 353 IPR036638 GO:0046983
Trre5g04991 466 Coils Coil 328 348 - -
Trre5g04991 466 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 142 459 - -
Trre5g04991 466 SMART finulus 295 344 IPR011598 GO:0046983
Trre5g04991 466 MobiDBLite consensus disorder prediction 230 297 - -
Trre5g04991 466 MobiDBLite consensus disorder prediction 246 269 - -
Trre5g04991 466 CDD ACT_UUR-ACR-like 395 455 - -
Trre5g04991 466 Gene3D - 279 353 IPR036638 GO:0046983
Trre5g04991 466 Pfam Helix-loop-helix DNA-binding domain 296 339 IPR011598 GO:0046983
Trre5g04991 466 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 289 338 IPR011598 GO:0046983
Trre5g04991 466 MobiDBLite consensus disorder prediction 270 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04991 Trre-Chr5 51503191 51506529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04991 37 439 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 35.281 1.26e-59 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre5g04991 HLH 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04991 - - tpra:123895756 643.269