Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre5g04974 | ATGATCAATATTCCAAACCTTAAAATCCCCGAATGGGACACAACACAATACGAGGGCACAAACACAAACATTTTCACTACAGAAGATTTTGATTTACCAATCCATGTTTTTTCAACAGACCAATTTCGAATGTTTGAATTCAAAGTGAGAAAATGCCAACGTGGCAGATCACATGACTGGACAGAATGTCCATACTCTCATCCTGGCGAGAAAGCTCGCCGGAGAGATCCACAAAAATACAATTACTCCGGCAATCCATGCCCGGAGTTTCGCAAATTAGGAAACTGCACCAAAGGTGATTCATGTTACTTTGCTCATGGTGTTTTTGAGTGTTGGCTTCACCCTTCTCGTTACAGAACTCAGCTTTGTAACGACAGAACTTCTTGTCGCCGGCGAGTTTGTTTCTTTGCTCATACCATTAATCAACTTCGTATCTCAACAAAATCTTCACCGGAATCATTTGTTTCGTCTCCTACTTCGGTTCTTGATTCTCCTCCTGAAAAATGTTCCCGATACGGTGTTGTTCCGGTGAACATGCAGGAATTAGTTGGCTTCATGAATAATGTTCGGCTTGATGATTCGGGTCGGGTTTCTCAGATGGGTTGTGTGTTTGGGCCTCCACGAGGTGGGTTTTTGAGTCTTCCATCATTCTCTGAAGGGGTTGTTATGGAGAGAGTTGAATCAGGAAGAGATCTTAGAGCAAAAATCTATGCAACATTGAGTAAAGTGAACTCTAACGATGGTGTTGTTTCGGTCCCTGTTCCTGATATTGGATGGGTTTCAGAACTGGTTAACTAA | 798 | 0.4236 | MINIPNLKIPEWDTTQYEGTNTNIFTTEDFDLPIHVFSTDQFRMFEFKVRKCQRGRSHDWTECPYSHPGEKARRRDPQKYNYSGNPCPEFRKLGNCTKGDSCYFAHGVFECWLHPSRYRTQLCNDRTSCRRRVCFFAHTINQLRISTKSSPESFVSSPTSVLDSPPEKCSRYGVVPVNMQELVGFMNNVRLDDSGRVSQMGCVFGPPRGGFLSLPSFSEGVVMERVESGRDLRAKIYATLSKVNSNDGVVSVPVPDIGWVSELVN | 265 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre5g04974 | 265 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 85 | 107 | IPR000571 | GO:0046872 | |
Trre5g04974 | 265 | SMART | c3hfinal6 | 117 | 140 | IPR000571 | GO:0046872 | |
Trre5g04974 | 265 | SMART | c3hfinal6 | 81 | 108 | IPR000571 | GO:0046872 | |
Trre5g04974 | 265 | PANTHER | UNKEMPT FAMILY MEMBER | 35 | 264 | IPR045234 | - | |
Trre5g04974 | 265 | ProSiteProfiles | Zinc finger C3H1-type profile. | 81 | 109 | IPR000571 | GO:0046872 | |
Trre5g04974 | 265 | FunFam | Zinc finger CCCH domain-containing protein 66 | 39 | 108 | - | - | |
Trre5g04974 | 265 | Gene3D | - | 76 | 152 | - | - | |
Trre5g04974 | 265 | SUPERFAMILY | CCCH zinc finger | 80 | 111 | IPR036855 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre5g04974 | Trre-Chr5 | 51408047 | 51408844 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre5g04974 | 15 | 144 | C2H2 Transcription Factor Family | AT5G12850 | 55.396 | 6.47e-51 | 175 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Trre5g04974 | zf-CCCH | 8.6e-05 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre5g04974 | - | K23048 | mtr:11430634 | 447.588 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Trre5g04974 | 5 | 51408047 | 51408844 | Trre5g04974 | 5 | 51408047 | 51408844 | ECH |