Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04974 ATGATCAATATTCCAAACCTTAAAATCCCCGAATGGGACACAACACAATACGAGGGCACAAACACAAACATTTTCACTACAGAAGATTTTGATTTACCAATCCATGTTTTTTCAACAGACCAATTTCGAATGTTTGAATTCAAAGTGAGAAAATGCCAACGTGGCAGATCACATGACTGGACAGAATGTCCATACTCTCATCCTGGCGAGAAAGCTCGCCGGAGAGATCCACAAAAATACAATTACTCCGGCAATCCATGCCCGGAGTTTCGCAAATTAGGAAACTGCACCAAAGGTGATTCATGTTACTTTGCTCATGGTGTTTTTGAGTGTTGGCTTCACCCTTCTCGTTACAGAACTCAGCTTTGTAACGACAGAACTTCTTGTCGCCGGCGAGTTTGTTTCTTTGCTCATACCATTAATCAACTTCGTATCTCAACAAAATCTTCACCGGAATCATTTGTTTCGTCTCCTACTTCGGTTCTTGATTCTCCTCCTGAAAAATGTTCCCGATACGGTGTTGTTCCGGTGAACATGCAGGAATTAGTTGGCTTCATGAATAATGTTCGGCTTGATGATTCGGGTCGGGTTTCTCAGATGGGTTGTGTGTTTGGGCCTCCACGAGGTGGGTTTTTGAGTCTTCCATCATTCTCTGAAGGGGTTGTTATGGAGAGAGTTGAATCAGGAAGAGATCTTAGAGCAAAAATCTATGCAACATTGAGTAAAGTGAACTCTAACGATGGTGTTGTTTCGGTCCCTGTTCCTGATATTGGATGGGTTTCAGAACTGGTTAACTAA 798 0.4236 MINIPNLKIPEWDTTQYEGTNTNIFTTEDFDLPIHVFSTDQFRMFEFKVRKCQRGRSHDWTECPYSHPGEKARRRDPQKYNYSGNPCPEFRKLGNCTKGDSCYFAHGVFECWLHPSRYRTQLCNDRTSCRRRVCFFAHTINQLRISTKSSPESFVSSPTSVLDSPPEKCSRYGVVPVNMQELVGFMNNVRLDDSGRVSQMGCVFGPPRGGFLSLPSFSEGVVMERVESGRDLRAKIYATLSKVNSNDGVVSVPVPDIGWVSELVN 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04974 265 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 85 107 IPR000571 GO:0046872
Trre5g04974 265 SMART c3hfinal6 117 140 IPR000571 GO:0046872
Trre5g04974 265 SMART c3hfinal6 81 108 IPR000571 GO:0046872
Trre5g04974 265 PANTHER UNKEMPT FAMILY MEMBER 35 264 IPR045234 -
Trre5g04974 265 ProSiteProfiles Zinc finger C3H1-type profile. 81 109 IPR000571 GO:0046872
Trre5g04974 265 FunFam Zinc finger CCCH domain-containing protein 66 39 108 - -
Trre5g04974 265 Gene3D - 76 152 - -
Trre5g04974 265 SUPERFAMILY CCCH zinc finger 80 111 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04974 Trre-Chr5 51408047 51408844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04974 15 144 C2H2 Transcription Factor Family AT5G12850 55.396 6.47e-51 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre5g04974 zf-CCCH 8.6e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04974 - K23048 mtr:11430634 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04974 5 51408047 51408844 Trre5g04974 5 51408047 51408844 ECH