Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04970 ATGGGTAATTTTGATCATATATCTCTTGGTCTTACGTTAGGAATAGGATCCCCTAAAAATATTAATATTGATTATGAGACAAATAATCAAATAGCTACTACAAAGATTGAACCGGATGATGAATATATTTATAATTTGCATCAACGTGCCTCAAATTCTACTTCATTTTCCAACTCATGTAATAGCATCAAGAGGGAGAGAGATCATAATTTCATCAACAGTGAACAAGTGCATCATGAGCCTCCTAATGATGATGTTGATGAAAATAGTAACTCCAATAGGAAGAAACTTAGGCTCAATAAAGAACAATCAGCAATATTGGAGGACACTTTCAAAGACCATTCTACCCTCAATACGAAGCAAAAGCAAGAATTGGCAACAAAGCTGAATCTTCGTACGAGACAAGTGGAGGTGTGGTTTCAGAATAGAAGGGCAAGGACAAAGTTGAAACAAACGGAGGTTGACTGCGAAGAATTGAAGAAGTGTTACGAAACTCTAACAGAAGAGAACAAGATGCTGGAAGAGGAATTGAAAGAGCTGAAATCGATGAAAACAACAACGGAACATTTTAATTATAAGCCACTTCCGGTAGCCGGTCTTACCGTTTGCCCTTCATGTAAGAAAATTTGTCCCAGCCGCCGCGGCGACAATGGCCCATCTCACACCACGGCTTTGCTTCTTAGCCCAAATGCCCAAAGTCATTTCTATACAAATAGTAAATATACGTTCACCCAATCTTCTGCAACTATTGCTAGCTAG 759 0.386 MGNFDHISLGLTLGIGSPKNINIDYETNNQIATTKIEPDDEYIYNLHQRASNSTSFSNSCNSIKRERDHNFINSEQVHHEPPNDDVDENSNSNRKKLRLNKEQSAILEDTFKDHSTLNTKQKQELATKLNLRTRQVEVWFQNRRARTKLKQTEVDCEELKKCYETLTEENKMLEEELKELKSMKTTTEHFNYKPLPVAGLTVCPSCKKICPSRRGDNGPSHTTALLLSPNAQSHFYTNSKYTFTQSSATIAS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04970 252 CDD homeodomain 94 151 IPR001356 GO:0003677
Trre5g04970 252 Pfam Homeodomain 94 148 IPR001356 GO:0003677
Trre5g04970 252 SMART halz 150 193 IPR003106 GO:0006355|GO:0043565
Trre5g04970 252 Coils Coil 142 186 - -
Trre5g04970 252 ProSiteProfiles 'Homeobox' domain profile. 90 150 IPR001356 GO:0003677
Trre5g04970 252 SUPERFAMILY Homeodomain-like 75 151 IPR009057 -
Trre5g04970 252 ProSitePatterns 'Homeobox' domain signature. 125 148 IPR017970 GO:0000981|GO:0006355
Trre5g04970 252 SMART HOX_1 92 154 IPR001356 GO:0003677
Trre5g04970 252 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 30 224 - -
Trre5g04970 252 Gene3D - 98 148 - -
Trre5g04970 252 Pfam Homeobox associated leucine zipper 150 184 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04970 Trre-Chr5 51378580 51379874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04970 1 209 Homeobox Transcription Factor Family AT2G22800 45.726 2.69e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre5g04970 Homeodomain 2.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04970 K09338 - gmx:100790927 202.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04970 5 51378580 51379874 Trre5g04970 5 51378580 51379874 ECH