Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04963 ATGGGGAGGGCACCTTGCTGTGACAAAGCAAACGTGAAGAAAGGACCTTGGTCGCCAGAAGAAGATGCTAAGCTCAAATCCTACATCCAACAACATGGAACTGGTGGTAACTGGATCACTTTACCACAAAAGATTGGCCTTAAGCGATGTGGCAAGAGTTGTCGGCTAAGATGGCTAAACTATCTTCGCCCTAACATCAAGCACGGTGGTTTCACCGAAGAAGAAGACAACATCATTTGTAGCCTTTACATCAGAATTGGAAGCAGGTGGTCAGTAATTGCAGGCCAATTACCAGGAAGAACTGATAATGATATAAAGAACTATTGGAACACGAAACTTAAAAAGAAGCTTTTAGGGAAACATCGCAAAGAACAACAATTGCAAGCGCGTAATAAGCATGATGAGAGAAATGGAAGAAAGAGTGAGAGTTCTTCATCAAATTTGGTTTATGAAAATACTACTCAACATATGTTAAATCCATATTGGCCATCACATAATTTACCTATGCATCTTCCACCTTTGACATACTCAAATCAACAAAGTCATACTCTTCCTAGTTTCAACGATCAAGATTCTATTAGAAAATTGTTAATCAAGCTTGGAGGGAGATTCTCTAACGAAGACGATGATTGTTATAGTCAACCAATCCTTGATCATGAGTTTAATTTTCAATTCCCAGATATCGGAGTTTCTTTGATGCAACAAATTCATGAAGAACATATTGGCTCTTCTTCCGGCTGCACGAGCTCTATAATGAACAGCAACCAATTAGTACAATATTTGCCTGATCAGTCTCAAAGTTATGCTCATGAATATTATGGTGAAGGAGTAGCTAGACCAGAATTGGTGCAAGAACAAGGAAGTTTCACTGCAACAACGACATCGAGTAATAATAATTATTCGCAAAAGTTAAGCGGGTTGGAATTCTTCTACGGAGAGGACATAGACGGTACAATTTGTAGTAACTGGGGTGAGACTGAGCTGTAG 987 0.3931 MGRAPCCDKANVKKGPWSPEEDAKLKSYIQQHGTGGNWITLPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYIRIGSRWSVIAGQLPGRTDNDIKNYWNTKLKKKLLGKHRKEQQLQARNKHDERNGRKSESSSSNLVYENTTQHMLNPYWPSHNLPMHLPPLTYSNQQSHTLPSFNDQDSIRKLLIKLGGRFSNEDDDCYSQPILDHEFNFQFPDIGVSLMQQIHEEHIGSSSGCTSSIMNSNQLVQYLPDQSQSYAHEYYGEGVARPELVQEQGSFTATTTSSNNNYSQKLSGLEFFYGEDIDGTICSNWGETEL 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04963 328 MobiDBLite consensus disorder prediction 122 141 - -
Trre5g04963 328 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Trre5g04963 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Trre5g04963 328 FunFam Transcription factor RAX3 7 68 - -
Trre5g04963 328 CDD SANT 71 111 IPR001005 -
Trre5g04963 328 Gene3D - 70 144 - -
Trre5g04963 328 CDD SANT 16 62 IPR001005 -
Trre5g04963 328 MobiDBLite consensus disorder prediction 119 147 - -
Trre5g04963 328 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Trre5g04963 328 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Trre5g04963 328 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Trre5g04963 328 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Trre5g04963 328 PANTHER OS09G0431300 PROTEIN 1 291 - -
Trre5g04963 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Trre5g04963 328 SMART sant 13 64 IPR001005 -
Trre5g04963 328 SMART sant 67 115 IPR001005 -
Trre5g04963 328 Gene3D - 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04963 Trre-Chr5 51326599 51327856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04963 1 199 MYB Transcription Factor Family AT3G49690 63.235 2.24e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre5g04963 Myb_DNA-binding 3.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04963 K09422 - gmx:778079 358.607