Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04957 ATGAAATCCATGAATGACAGTAGTAGTAACTCTGATGACAGAACCAACAACAATAACAACAACTGGTTAGGTTTCTCTCTCTCACCCCACATCAAACTTGGAGGAGGACTTCAACTTTCTTCTTCTTCATCCTCTTCTCATCTTCATAATCATTACCAACATCCTTCTTCACCTTCCACTGTTTCCAACACTCTTCCTACATCTTTCCATTTTTCACCTTCTCATTCTCATTTCAACAACTCTGCTATCTGTTATGGTGTTCCTGAAAATGCCAACTTTCATTCACCTTTAACTGTTATGCCTCTTAAGTCTGATGGTTCTCTTTGTATCATGGAAGCTCTTGGTAGATCACAATCACAATCACAAGTGATGGTGTCATCTTCATCTCCAAAACTTGAAGACTTTCTAGGTGGTGCAACTCATGATGAATATGGTAGCCATGAAAGAGAAGCAATGGCTTTAAGCTTAGATAGTATTTACTATAATAGTCAACAAAATGGAGATCCTAATCAAGCTAATAGAGACCATTCTCTTGATCTTCTTTCAGAATCTTTTAGACAACAAACATCATCACATTCACATCCATATTATGCAGCACTTGGTTTTCATGGAATGTTTCAAACAGTACCATTAGATGTAGTAGAATCAAAACAAAACACAAACCATGTTAATGTTTGTACTTCTCAAATACCTCAAAATTGGGTGTCTCCAAGAGATTATAGTTCTTCTGTTTCTCAGACTAATTTGGAACAACAAATGAACAGTGCTAGTTCTGTTGGTACTGTAGGATGTGGTGAGTTACAATCTTTAAGTCTTTCAATGAGTCCTGGTTCACAATCTAGTTGTGTTACTGCTCCTAGTCAGATCTCACCTACTGGAACAGAATCAGTGACAATGGATGCTAAGAAAAGAGGAGCTGCTAAACTTGGACAGAAACAACCTGTGCATAGGAAATCTATTGACACTTTTGGTCAAAGAACTTCACAATATAGAGGTGTCACAAGGCATAGATGGACTGGTAGATATGAAGCACATTTATGGGATAACAGTTGCAAGAAAGAAGGACAGACTAGAAAAGGAAGACAAGGTGGTTATGATATGGAAGAGAAAGCTGCAAGAGCTTATGATCAAGCAGCACTTAAGTATTGGGGACCTTCAACACATATTAACTTCCCGTTAGAAAATTACCAAACTCAACTTGAGGAAATGAAGAACATGACTAGGCAGGAATATGTTGCACATTTAAGAAGAAAAAGCAGTGGTTTTTCAAGGGGTGCTTCAATGTACAGAGGAGTCACAAGACACCACCAACATGGTAGGTGGCAAGCTAGGATTGGAAGAGTTGCTGGTAACAAAGATCTTTACCTTGGAACATTCAGCACTCAAGAGGAAGCAGCAGAAGCATATGATGTAGCAGCAATAAAATTCCGTGGATCGAATGCTGTCACAAATTTCGACATTTCTAAATATGATGTTGAAAGGATCATGGCTAGTAATACTCTTCTGTCCGGCGAGCATGCTAGGAGAATCAAAGATAACGTTCCACGAATCGATGTTATCGAATATAACGATACTAATGTATCGAACCAGAACAATGGTGAAGCTGCTCAAGTGCGAAACGGCAATGAAAATGATTCTAAATGGAAAATGGTATCAAATAGTTGTGACCAAAAAAATGTTGTGAATTCTAGTGGAAGTTACAAAAATTCTGATTTCTCAATGTCTTTACAAGACCTTGTTGCTGGCCAACAACATGTGTTGGATGATTCTAACAAGATTGGGACACATTTTTCAAATCCATCTTCATTGGTGACAAGTTTAAGCAGTTCAAGAGAAGCTAGTCCTGATAAAAATGGTCCTTCTCTACTTTTTCCAAAGCTTTCAATGGAATCAAAAATTGCTACTAATAATGGTGTTGGTGTTAGTTCTTGGTTTCCTTCACAAGTAACAAATCAAATGAGGCCAACTTCTTCTATCAATTTGTCACATTTTCCAGTTTTTGCTGCATGGAATGATGCCTAG 2022 0.3783 MKSMNDSSSNSDDRTNNNNNNWLGFSLSPHIKLGGGLQLSSSSSSSHLHNHYQHPSSPSTVSNTLPTSFHFSPSHSHFNNSAICYGVPENANFHSPLTVMPLKSDGSLCIMEALGRSQSQSQVMVSSSSPKLEDFLGGATHDEYGSHEREAMALSLDSIYYNSQQNGDPNQANRDHSLDLLSESFRQQTSSHSHPYYAALGFHGMFQTVPLDVVESKQNTNHVNVCTSQIPQNWVSPRDYSSSVSQTNLEQQMNSASSVGTVGCGELQSLSLSMSPGSQSSCVTAPSQISPTGTESVTMDAKKRGAAKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDQAALKYWGPSTHINFPLENYQTQLEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGSNAVTNFDISKYDVERIMASNTLLSGEHARRIKDNVPRIDVIEYNDTNVSNQNNGEAAQVRNGNENDSKWKMVSNSCDQKNVVNSSGSYKNSDFSMSLQDLVAGQQHVLDDSNKIGTHFSNPSSLVTSLSSSREASPDKNGPSLLFPKLSMESKIATNNGVGVSSWFPSQVTNQMRPTSSINLSHFPVFAAWNDA 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04957 673 MobiDBLite consensus disorder prediction 600 616 - -
Trre5g04957 673 Gene3D AP2/ERF domain 428 488 IPR036955 GO:0003700|GO:0006355
Trre5g04957 673 Gene3D AP2/ERF domain 328 394 IPR036955 GO:0003700|GO:0006355
Trre5g04957 673 Pfam AP2 domain 329 384 IPR001471 GO:0003700|GO:0006355
Trre5g04957 673 Pfam AP2 domain 429 478 IPR001471 GO:0003700|GO:0006355
Trre5g04957 673 MobiDBLite consensus disorder prediction 275 297 - -
Trre5g04957 673 ProSiteProfiles AP2/ERF domain profile. 428 486 IPR001471 GO:0003700|GO:0006355
Trre5g04957 673 FunFam AP2-like ethylene-responsive transcription factor 427 488 - -
Trre5g04957 673 ProSiteProfiles AP2/ERF domain profile. 329 392 IPR001471 GO:0003700|GO:0006355
Trre5g04957 673 MobiDBLite consensus disorder prediction 600 622 - -
Trre5g04957 673 CDD AP2 427 488 IPR001471 GO:0003700|GO:0006355
Trre5g04957 673 MobiDBLite consensus disorder prediction 1 21 - -
Trre5g04957 673 MobiDBLite consensus disorder prediction 275 298 - -
Trre5g04957 673 MobiDBLite consensus disorder prediction 36 63 - -
Trre5g04957 673 SUPERFAMILY DNA-binding domain 427 488 IPR016177 GO:0003677
Trre5g04957 673 FunFam AP2-like ethylene-responsive transcription factor ANT 328 394 - -
Trre5g04957 673 SMART rav1_2 329 398 IPR001471 GO:0003700|GO:0006355
Trre5g04957 673 SMART rav1_2 428 492 IPR001471 GO:0003700|GO:0006355
Trre5g04957 673 CDD AP2 328 392 IPR001471 GO:0003700|GO:0006355
Trre5g04957 673 PRINTS Ethylene responsive element binding protein signature 468 488 IPR001471 GO:0003700|GO:0006355
Trre5g04957 673 PRINTS Ethylene responsive element binding protein signature 330 341 IPR001471 GO:0003700|GO:0006355
Trre5g04957 673 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 122 569 - -
Trre5g04957 673 SUPERFAMILY DNA-binding domain 328 394 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04957 Trre-Chr5 51240283 51243459 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04957 1 509 AP2-EREBP Transcription Factor Family AT4G37750 53.148 7.70e-160 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre5g04957 AP2 4.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04957 K09285 - gmx:100798179 817.379