Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04956 ATGAAATCCATGAATGACAGTAGTAGTAACTCTGATGACAGAACCAACAACAATAACAACAACTGGTTAGGTTTCTCTCTCTCACCCCACATCAAACTTGGAGGAGGACTTCAACTTTCTTCTTCTTCATCCTCTTCTCATCTTCATAATCATTACCAACATCCTTCTTCACCTTCCACTGTTTCCAACACTCTTCCTACATCTTTCCATTTTTCACCTTCTCATTCTCATTTCAACAACTCTGCTATCTGTTATGGTGTTCCTGAAAATGCCAACTTTCATTCACCTTTAACTGTTATGCCTCTTAAGTCTGATGGTTCTCTTTGTATCATGGAAGCTCTTGGTAGATCACAATCACAATCACAAGTGATGGTGTCATCTTCATCTCCAAAACTTGAAGACTTTCTAGGTGGTGCAACTCATGATGAATATGGTAGCCATGAAAGAGAAGCAATGGCTTTAAGCTTAGATAGTATTTACTATAATAGTCAACAAAATGGAGATCCTAATCAAGCTAATAGAGACCATTCTCTTGATCTTCTTTCAGAATCTTTTAGACAACAAACATCATCACATTCACATCCATATTATGCAGCACTTGGTTTTCATGGAATGTTTCAAACAGTACCATTAGATGTAGTAGAATCAAAACAAAACACAAACCATGTTAATGTTTGTACTTCTCAAATACCTCAAAATTGGGTGTCTCCAAGAGATTATAGTTCTTCTGTTTCTCAGACTAATTTGGAACAACAAATGAACAGTGCTAGTTCTGTTGGTACTGTAGGATGTGGTGAGTTACAATCTTTAAGTCTTTCAATGAGTCCTGGTTCACAATCTAGTTGTGTTACTGCTCCTAGTCAGATCTCACCTACTGGAACAGAATCAGTGACAATGGATGCTAAGAAAAGAGGAGCTGCTAAACTTGGACAGAAACAACCTGTGCATAGGAAATCTATTGACACTTTTGGTCAAAGAACTTCACAATATAGAGGTGTCACAAGGCATAGATGGACTGGTAGATATGAAGCACATTTATGGGATAACAGTTGCAAGAAAGAAGGACAGACTAGAAAAGGAAGACAAGTATATTTGGGTGGTTATGATATGGAAGAGAAAGCTGCAAGAGCTTATGATCAAGCAGCACTTAAGTATTGGGGACCTTCAACACATATTAACTTCCCGTTAGAAAATTACCAAACTCAACTTGAGGAAATGAAGAACATGACTAGGCAGGAATATGTTGCACATTTAAGAAGAAAAAGCAGTGGTTTTTCAAGGGGTGCTTCAATGTACAGAGGAGTCACAAGACACCACCAACATGGTAGGTGGCAAGCTAGGATTGGAAGAGTTGCTGGTAACAAAGATCTTTACCTTGGAACATTCAGCACTCAAGAGGAAGCAGCAGAAGCATATGATGTAGCAGCAATAAAATTCCGTGGATCGAATGCTGTCACAAATTTCGACATTTCTAAATATGATGTTGAAAGGATCATGGCTAGTAATACTCTTCTGTCCGGCGAGCATGCTAGGAGAATCAAAGATAACGTTCCACGAATCGATGTTATCGAATATAACGATACTAATGTATCGAACCAGAACAATGGTGAAGCTGCTCAAGTGCGAAACGGCAATGAAAATGATTCTAAATGGAAAATGGTATCAAATAGTTGTGACCAAAAAAATGTTGTGAATTCTAGTGGAAGTTACAAAAATTCTGATTTCTCAATGTCTTTACAAGACCTTGTTGCTGGCCAACAACATGTGTTGGATGATTCTAACAAGATTGGGACACATTTTTCAAATCCATCTTCATTGGTGACAAGTTTAAGCAGTTCAAGAGAAGCTAGTCCTGATAAAAATGGTCCTTCTCTACTTTTTCCAAAGCTTTCAATGGAATCAAAAATTGCTACTAATAATGGTGTTGGTGTTAGTTCTTGGTTTCCTTCACAAGTAACAAATCAAATGAGGCCAACTTCTTCTATCAATTTGTCACATTTTCCAGTTTTTGCTGCATGGAATGATGCCTAG 2031 0.3776 MKSMNDSSSNSDDRTNNNNNNWLGFSLSPHIKLGGGLQLSSSSSSSHLHNHYQHPSSPSTVSNTLPTSFHFSPSHSHFNNSAICYGVPENANFHSPLTVMPLKSDGSLCIMEALGRSQSQSQVMVSSSSPKLEDFLGGATHDEYGSHEREAMALSLDSIYYNSQQNGDPNQANRDHSLDLLSESFRQQTSSHSHPYYAALGFHGMFQTVPLDVVESKQNTNHVNVCTSQIPQNWVSPRDYSSSVSQTNLEQQMNSASSVGTVGCGELQSLSLSMSPGSQSSCVTAPSQISPTGTESVTMDAKKRGAAKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDQAALKYWGPSTHINFPLENYQTQLEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGSNAVTNFDISKYDVERIMASNTLLSGEHARRIKDNVPRIDVIEYNDTNVSNQNNGEAAQVRNGNENDSKWKMVSNSCDQKNVVNSSGSYKNSDFSMSLQDLVAGQQHVLDDSNKIGTHFSNPSSLVTSLSSSREASPDKNGPSLLFPKLSMESKIATNNGVGVSSWFPSQVTNQMRPTSSINLSHFPVFAAWNDA 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04956 676 ProSiteProfiles AP2/ERF domain profile. 329 395 IPR001471 GO:0003700|GO:0006355
Trre5g04956 676 FunFam AP2-like ethylene-responsive transcription factor 430 491 - -
Trre5g04956 676 Pfam AP2 domain 329 387 IPR001471 GO:0003700|GO:0006355
Trre5g04956 676 Pfam AP2 domain 432 481 IPR001471 GO:0003700|GO:0006355
Trre5g04956 676 MobiDBLite consensus disorder prediction 275 297 - -
Trre5g04956 676 SUPERFAMILY DNA-binding domain 430 491 IPR016177 GO:0003677
Trre5g04956 676 MobiDBLite consensus disorder prediction 603 619 - -
Trre5g04956 676 SUPERFAMILY DNA-binding domain 328 397 IPR016177 GO:0003677
Trre5g04956 676 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 122 572 - -
Trre5g04956 676 PRINTS Ethylene responsive element binding protein signature 330 341 IPR001471 GO:0003700|GO:0006355
Trre5g04956 676 PRINTS Ethylene responsive element binding protein signature 471 491 IPR001471 GO:0003700|GO:0006355
Trre5g04956 676 MobiDBLite consensus disorder prediction 1 21 - -
Trre5g04956 676 CDD AP2 328 395 IPR001471 GO:0003700|GO:0006355
Trre5g04956 676 MobiDBLite consensus disorder prediction 275 298 - -
Trre5g04956 676 MobiDBLite consensus disorder prediction 603 625 - -
Trre5g04956 676 MobiDBLite consensus disorder prediction 36 63 - -
Trre5g04956 676 ProSiteProfiles AP2/ERF domain profile. 431 489 IPR001471 GO:0003700|GO:0006355
Trre5g04956 676 Gene3D AP2/ERF domain 431 491 IPR036955 GO:0003700|GO:0006355
Trre5g04956 676 Gene3D AP2/ERF domain 328 397 IPR036955 GO:0003700|GO:0006355
Trre5g04956 676 SMART rav1_2 431 495 IPR001471 GO:0003700|GO:0006355
Trre5g04956 676 SMART rav1_2 329 401 IPR001471 GO:0003700|GO:0006355
Trre5g04956 676 CDD AP2 430 491 IPR001471 GO:0003700|GO:0006355
Trre5g04956 676 FunFam AP2-like ethylene-responsive transcription factor ANT 328 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04956 Trre-Chr5 51240283 51243459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04956 1 512 AP2-EREBP Transcription Factor Family AT4G37750 53.704 2.31e-164 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre5g04956 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04956 K09285 - gmx:100798179 828.55