Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04955 ATGGATTCTGACAAATCCAAACTCTTCGTTGGTGGCATTTCTCGCGACACAACTGAAGATAATCTCAAACACCATTTCTCCAAATACGGCAACGTTTTACTTTCCACCATCTCTTTCGACCGCACCACCCGAATCCCTAGAGGTTTTGGCTTCGTTACTTTCTCCGATATCTCTTCAGCTCACAATGCCCTTCAAGACACCCACGTTATTCTCGGAAAAAAGGTAGAAGTGAGAAAAGCAATACCTAGAAGTGAACAGCAACAACAAAATCAATTACAGAATAGAAGGGGATATAGCTATAGTAATTATGAATGTAACAGTGATTACATTAAGACTAAAAAGATTTTTGTGGGAGGTTTACCTGCTAATATGTTTGTGGACGAGTTTAAGAGATACTTTGAGAAATTTGGTACAATAATTGATGTGGTGGTGATGCAGGATAGTGTAACTCATAGGCCGAGAGGTTTTGGGTTTATTACCTTTGATTCCGAAGATTCTGTGCAAAATGTTATGATGAAAAAATTTCATGACTTGAATGGTAGACAGGTGGAGGTTAAGAGAGCTGTTCCGAGAGAGGGGGAGTCTGGTTATGATGGTTTTAGTAATAAGATAAGATATCAGAGTGATAGAGGAGCCACTGAAACAACTTTACTTCCTTCTAGTCCCGCAAACACGCTTCCTGGATTTGCTCCTTTACCTGTGTATACTAGTGGTGGTGATGGAGTATATGGATACGGATTAAATCCCTATGGTTGCTGGTACCCTGTGGGTGGGTATGTGGGGAATGGATATGCAGCTCCGTCGGATGCTTATAGCAACTTCTGGTATGGGCAAATGGTAACTGGTCCTCAGACATGTCAGATGCCTTATGCTAATGTTATGCCCAATGTTGCATATATGGGTGGCAGGGTCGAAATTGTAGGTAGTGGTGCAGGAACATGGGGATACAATGCCTTTCTTGGGTCCACAACAAATTATAAATTGGACCAACCTTTTATTACTAATGGATTTGTTCCATGCAATGTACCATCGCCTCATGGTGTAAAACAGATTGTTTGCGCTTCAAGTTTTAAAGGAAGCAATGGGGAAATTTCTAGTTGA 1101 0.4105 MDSDKSKLFVGGISRDTTEDNLKHHFSKYGNVLLSTISFDRTTRIPRGFGFVTFSDISSAHNALQDTHVILGKKVEVRKAIPRSEQQQQNQLQNRRGYSYSNYECNSDYIKTKKIFVGGLPANMFVDEFKRYFEKFGTIIDVVVMQDSVTHRPRGFGFITFDSEDSVQNVMMKKFHDLNGRQVEVKRAVPREGESGYDGFSNKIRYQSDRGATETTLLPSSPANTLPGFAPLPVYTSGGDGVYGYGLNPYGCWYPVGGYVGNGYAAPSDAYSNFWYGQMVTGPQTCQMPYANVMPNVAYMGGRVEIVGSGAGTWGYNAFLGSTTNYKLDQPFITNGFVPCNVPSPHGVKQIVCASSFKGSNGEISS 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04955 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Trre5g04955 366 Gene3D - 1 109 IPR012677 -
Trre5g04955 366 SUPERFAMILY RNA-binding domain, RBD 3 102 IPR035979 GO:0003676
Trre5g04955 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 172 IPR000504 GO:0003723
Trre5g04955 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Trre5g04955 366 SUPERFAMILY RNA-binding domain, RBD 87 197 IPR035979 GO:0003676
Trre5g04955 366 Gene3D - 110 197 IPR012677 -
Trre5g04955 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Trre5g04955 366 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 297 - -
Trre5g04955 366 SMART rrm1_1 114 186 IPR000504 GO:0003723
Trre5g04955 366 SMART rrm1_1 7 78 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04955 Trre-Chr5 51196467 51197749 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04955 6 259 Eukaryotic Initiation Factors Gene Family AT4G34110 23.938 1.47e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04955 K14411 - gmx:100816822 499.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04955 5 51196467 51197749 Trre5g04955 5 51196467 51197749 ECH