Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04954 ATGAATTTCAAGATGGATTCTGACAAATCCAAACTCTTCGTTGGTGGCATTTCTCGCGACACAACTGAAGATAATCTCAAACACCATTTCTCCAAATACGGCAACGTTTTACTTTCCACCATCTCTTTCGACCGCACCACCCGAATCCCTAGAGGTTTTGGCTTCGTTACTTTCTCCGATATCTCTTCAGCTCACAATGCCCTTCAAGACACCCACGTTATTCTCGGAAAAAAGGTAGAAGTGAGAAAAGCAATACCTAGAAGTGAACAGCAACAACAAAATCAATTACAGAATAGAAGGGGATATAGCTATAGTAATTATGAATGTAACAGTGATTACATTAAGACTAAAAAGATTTTTGTGGGAGGTTTACCTGCTAATATGTTTGTGGACGAGTTTAAGAGATACTTTGAGAAATTTGGTACAATAATTGATGTGGTGGTGATGCAGGATAGTGTAACTCATAGGCCGAGAGGTTTTGGGTTTATTACCTTTGATTCCGAAGATTCTGTGCAAAATGTTATGATGAAAAAATTTCATGACTTGAATGGTAGACAGGTGGAGGTTAAGAGAGCTGTTCCGAGAGAGGGGGAGTCTGGTTATGATGGTTTTAGTAATAAGATAAGATATCAGAGTGATAGAGGAGCCACTGAAACAACTTTACTTCCTTCTAGTCCCGCAAACACGCTTCCTGGATTTGCTCCTTTACCTGTGTATACTAGTGGTGGTGATGGAGTATATGGATACGGATTAAATCCCTATGGTTGCTGGTACCCTGTGGGTGGGTATGTGGGGAATGGATATGCAGCTCCGTCGGATGCTTATAGCAACTTCTGGTATGGGCAAATGGTAACTGGTCCTCAGACATGTCAGATGCCTTATGCTAATGTTATGCCCAATGTTGCATATATGGGTGGCAGGGTCGAAATTGTAGGTAGTGGTGCAGGAACATGGGGATACAATGCCTTTCTTGGGTCCACAACAAATTATAAATTGGACCAACCTTTTATTACTAATGGATTTGTTCCATGCAATGTACCATCGCCTCATGGTGTAAAACAGATTGTTTGCGCTTCAAGTTTTAAAGGAAGCAATGGGGAAATTTCTAGTTGA 1113 0.4088 MNFKMDSDKSKLFVGGISRDTTEDNLKHHFSKYGNVLLSTISFDRTTRIPRGFGFVTFSDISSAHNALQDTHVILGKKVEVRKAIPRSEQQQQNQLQNRRGYSYSNYECNSDYIKTKKIFVGGLPANMFVDEFKRYFEKFGTIIDVVVMQDSVTHRPRGFGFITFDSEDSVQNVMMKKFHDLNGRQVEVKRAVPREGESGYDGFSNKIRYQSDRGATETTLLPSSPANTLPGFAPLPVYTSGGDGVYGYGLNPYGCWYPVGGYVGNGYAAPSDAYSNFWYGQMVTGPQTCQMPYANVMPNVAYMGGRVEIVGSGAGTWGYNAFLGSTTNYKLDQPFITNGFVPCNVPSPHGVKQIVCASSFKGSNGEISS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04954 370 Gene3D - 114 201 IPR012677 -
Trre5g04954 370 Gene3D - 2 113 IPR012677 -
Trre5g04954 370 SMART rrm1_1 11 82 IPR000504 GO:0003723
Trre5g04954 370 SMART rrm1_1 118 190 IPR000504 GO:0003723
Trre5g04954 370 SUPERFAMILY RNA-binding domain, RBD 91 201 IPR035979 GO:0003676
Trre5g04954 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Trre5g04954 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 194 IPR000504 GO:0003723
Trre5g04954 370 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 301 - -
Trre5g04954 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 78 IPR000504 GO:0003723
Trre5g04954 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 176 IPR000504 GO:0003723
Trre5g04954 370 SUPERFAMILY RNA-binding domain, RBD 6 106 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04954 Trre-Chr5 51196455 51197749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04954 10 263 Eukaryotic Initiation Factors Gene Family AT4G34110 23.938 1.65e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04954 K14411 - gmx:100816822 508.449