Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04952 ATGCTTTCTGAAAGTGAAATACAATACCTCTTTTCCCTCATTAGCCAACCAGGAGACCTAGCCAGTCCTAGCTCCGGTTCACAGGGTTCAAACCGGACGGTTTACTCTTCAGAAGAAAGAAAACTAAGGCGCATGCAGTCGAACCGGGAATCAGCTCGACGGTCCCGTTGCAGAAAGAAGACACATTTAGAGAACCTCACGAACCGGTTGAACCGGTTGAAATTTGAAAATCAAGAACTAAAAAACCAACTAGCCTTCACCATGAATCAACATCTTCTACTATCATTAGAGAATGATCAACTAATATCTGAATCTGTTGATCTTTTGGCAACACTTTTAGATCTATGTGCTATTTTAAGCAACACTATCACCATGCCTTAA 381 0.4147 MLSESEIQYLFSLISQPGDLASPSSGSQGSNRTVYSSEERKLRRMQSNRESARRSRCRKKTHLENLTNRLNRLKFENQELKNQLAFTMNQHLLLSLENDQLISESVDLLATLLDLCAILSNTITMP 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04952 126 PANTHER BZIP TRANSCRIPTION FACTOR 44 23 120 - -
Trre5g04952 126 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 43 58 IPR004827 GO:0003700|GO:0006355
Trre5g04952 126 SUPERFAMILY Leucine zipper domain 40 94 IPR046347 GO:0003700|GO:0006355
Trre5g04952 126 CDD bZIP_plant_GBF1 41 91 IPR045314 GO:0003700|GO:0006355
Trre5g04952 126 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 38 85 IPR004827 GO:0003700|GO:0006355
Trre5g04952 126 Coils Coil 63 90 - -
Trre5g04952 126 SMART brlzneu 36 100 IPR004827 GO:0003700|GO:0006355
Trre5g04952 126 MobiDBLite consensus disorder prediction 19 58 - -
Trre5g04952 126 Pfam bZIP transcription factor 39 84 IPR004827 GO:0003700|GO:0006355
Trre5g04952 126 MobiDBLite consensus disorder prediction 19 35 - -
Trre5g04952 126 Coils Coil 35 55 - -
Trre5g04952 126 Gene3D - 38 91 - -
Trre5g04952 126 MobiDBLite consensus disorder prediction 36 52 - -
Trre5g04952 126 FunFam BZIP transcription factor 38 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04952 Trre-Chr5 51185021 51185401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04952 2 119 bZIP Transcription Factor Family AT3G49760 37.600 1.29e-17 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre5g04952 bZIP_1 8.4e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04952 - - cam:101509317 202.601