Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04936 ATGGCTTTTGCAGGAACAACTCAAAAGTGCATGTCTTGTGAAAAAACTGTTTATCTTGTTGATAAGTTGACTGCAGATAACCGAGTTTACCACAAAGGTTGCTTCAGATGCCACCACTGCAAAGGAACCCTCAAGCTTAGCAACTATAACTCTTTTGAGGGAGTTCTTTACTGCAAGCCACACTTTGACCAAATCTTCAAAAGAACTGGTAGTCTTGACAAAAGCTTTGAAGGAACACCAAAAATTGCAAAGCCAGAAAAAACCAGTGATAATGAGAAACCTGCAGCAGCCAAAGTGTCTAGCATGTTTGGTGGTACCAGAGAGAAATGTGCTGGTTGTCAGAAAACAGTTTACCCTACTGAAAAGGTTAGTGTGAATGGAACTCCTTATCACAAGAGTTGTTTCAAATGCATTCATGGAGGGTGTATTATAAGTCCTTCTAATTACATTGCACATGAAGGAAAACTCTATTGTAAACATCACCATATCCAACTGATCAAGGAGAAGGGTAATTTAAGCCAGCTTGAAGGTGATCATGAGAAGAATACTAACATTGAAGTAGTTGCAGCTGAGACATGA 579 0.3938 MAFAGTTQKCMSCEKTVYLVDKLTADNRVYHKGCFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQIFKRTGSLDKSFEGTPKIAKPEKTSDNEKPAAAKVSSMFGGTREKCAGCQKTVYPTEKVSVNGTPYHKSCFKCIHGGCIISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGDHEKNTNIEVVAAET 192
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04936 192 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Trre5g04936 192 FunFam LIM domain and actin-binding 1 4 74 - -
Trre5g04936 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Trre5g04936 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Trre5g04936 192 SMART lim_4 9 61 IPR001781 -
Trre5g04936 192 SMART lim_4 109 161 IPR001781 -
Trre5g04936 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Trre5g04936 192 PANTHER OS06G0237300 PROTEIN 4 95 - -
Trre5g04936 192 Pfam LIM domain 10 63 IPR001781 -
Trre5g04936 192 Pfam LIM domain 110 164 IPR001781 -
Trre5g04936 192 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Trre5g04936 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Trre5g04936 192 CDD LIM2_SF3 110 170 - -
Trre5g04936 192 CDD LIM1_SF3 6 68 - -
Trre5g04936 192 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Trre5g04936 192 Gene3D Cysteine Rich Protein 105 174 - -
Trre5g04936 192 Gene3D Cysteine Rich Protein 4 74 - -
Trre5g04936 192 FunFam LIM domain and actin-binding 1 104 174 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre5g04936 Trre-Chr5 51049403 51051127 Dispersed/Wgd
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Trre5g04936 LIM 6.4e-13 CL0167
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04936 K09377 - gmx:100305720 377.481