Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04932 ATGGAACGTTTGCCAAAACCTGATATCAACTTCGAACCTGAGTATTGTCCGGAGGCTGTGATTGAATGGCACCGCTTAACAGGACTAAAAGACCGCAAAGCAAGTGCATGTAGAAGGGATTTATCTTTGAAAGCAAAACAACATCTTCTTTTCTTGGGTTGGAAGTTTTGGTTTACTGACAAAATATGTAGATGGGAAATGCGTTATACTGATACCAATGGCAAAACCTTTCCCAGTCTTAAAGCGGCCTGTAAGAGTTGTATTGAAAGTGGAGGCTGTTCCCTCAGACAACCTTCAACTGCAGCAGCAGCAGCAGCAACAACATCAATTTCTTCATCTCAGTCATCTCAGTTACAGTCGAAAAAGAGACCGAGAGAATCCGAAGTAACTGGTGAAGTAGATGGAGTTTTTCCCCGCAAACACCCTTCACTTGCAGCAGCAGCAGCACCACCTGCAACATCAACCTTTTCATTTCCATTGCAGTCGATGAATCAACCAAGAGAATACGAAGAAGCCAATAAAGACGATGATTTTTTTTCCTTCAAACGCCCTTCATTCGTAGCACCACCAGCATCAATCTTTTCGTCTCCATTGCAGTCGATGAACCAACCGAGAGAATACAAAGAAATCAATGAAAACGATGGAGTTAATTTCCTCCAACACCCTTCACCAGCACCACCAGCAGCAGAAACATCAATCTTTTCGTTTCCATTTCAGTCGTTGATGCAACCGAGAGAATACGAAGAAACCAATGAAGTAAATGGAGATTTTTACCTCAAGCACCCTTCCACTGCAGCACCACCAGCAGCAGCAACATCAATCTCTTGGTCTCCATTACAGTCGAAAAAGCAACCAGAATCAGAAGAAGCCGATGAAAAAGGAGGATGTTCCCTCAATCAACCTTCAACCGCAACACCAGAAGCAGCTCTAACAACAACATTGATCTCTTCACCTCCATCACAGTCGAAAGAGCAACCGAGAGAATCCAAAGAAACCGATGAATCAACTTCCGATGATTCAACTTCCGATGAGGATTCTGATGATGATTCAACTTCCGATGAGGATTCTGACGATGATTCAACTTCAGATGAGGATTCTGAACCTTCCAACTCTAGTTTTGGTAAAAAAGCTCCGGTGACTATGGTCTCAACATCAAAGGAAGATGAGAAACATGCGAGTCAATCTGAATCAGAAGTTACTAATTCGGTGGGAAGTGGTGAAAGAGGAAAAGTATTAAAGATGAGTGTAATGGAGAAGAATTCTGAGAGTTGTAATAATAGAGGGAAAGTATTAAAGACAAGTATAATGGAGAATAATTCAGAGAATCGCCGAAAAAGAGGGATGGTATTAAAGAGGGAAGGTGTAAGGGAAAGGTATTCACTTGTTTCTTGGTTGATAAAGAATCAAGTTTTGGTTCCAGGGACTGATGTGTTTTGTCGCGGTAGTAACAATGTTGTCAAAAGAGGGAGTTTATTTAGTGATGGTATAGTTTGTGATTGTTGTCATGTTACTTTCACTGTCACTGGATTTGAGGCTCATGCTGCTTGTACAAGACATAGACCATCCACTAGTATCTTGTTGGAAGACGGAAGGTCGTTGTTGGAATGTCAAAGGGAAGCTCAGAGTTCACGTGATCAAACCGACAATCATTGTGTAGCCGAAGCAAATTCTGAAGCAAATAATGACAATGTTTGTGCTATTTGTGGTTTTGGAGGCGACATAGTACTATGTGACCGATGTCCTTCTTCATTCCATCTCAGTTGTTTAGGTCTCGATCGAGTTCCAGATGGTGATTGGTTCTGTCCAACTTGTTGCTGCAAAGTATGCTATGGACCCAAATGCAAACAGGAATGTGCAGATCACAATGATAACAATATTCTTGCTTGTGTTCAATGTGAGCAAAAATTTCACTTTGGCTGCGTAAAGGCTATAGGATTTGGACCTAGTGACACGGAGAATGCTAAAAAGAAGGATTGGTTTTGCAGTGTAGTTTGTGGGAACATGGTCTTATGTCTAAAGAAGCTGTTAGGGAAACCAATTATGATTGCAGATAATATAACTTGGACATTGTTGAAGAATAATGCGAGTAGTGATTATGATTATGATGGTGGAAATTTTACTTCTTATGAGTTTAGTCTAAATAAGAGAAAGTTGAATTCGGCTCTTGGTGTATTGTATCAGAGTTTTAACCCAAGCATTGATGCTTTCTCCGGAAGAGAGTTGATTAAAGATGTTGTATTTAGTAGAGACTCAAAACATAATCGTCTGAACTTTCGTGGTTTCTATAATGTGATTTTAGAGAAAATGGGCGAAGTGGTTTCAGTGGCAACTATAAGGATTTATGGTCCAAAGGTTGCTGAGGTAGTCTTCGTGGCAACCAAGGAACAACATCGAAAACAAGGATTGTGTCGTTTGTTGATGGACGAGCTTGAGAAACAGTTGATTCGCTTAGGAGTTGAGAGCTTTGTTTTGCATTCATCTGAGGATGCTATAAACACTTGGACAAAAGCATTTGGTTTTGATAGGATGACTGGTAAAGACAAGTGTCAATTTATCGACAATACTTTCTTAGAATTTCAGAACTCTATCATGTGCCTTAAACTGCTGAATAGACCTATATGGCCTTACATTGCTCGATCATAG 2643 0.4048 MERLPKPDINFEPEYCPEAVIEWHRLTGLKDRKASACRRDLSLKAKQHLLFLGWKFWFTDKICRWEMRYTDTNGKTFPSLKAACKSCIESGGCSLRQPSTAAAAAATTSISSSQSSQLQSKKRPRESEVTGEVDGVFPRKHPSLAAAAAPPATSTFSFPLQSMNQPREYEEANKDDDFFSFKRPSFVAPPASIFSSPLQSMNQPREYKEINENDGVNFLQHPSPAPPAAETSIFSFPFQSLMQPREYEETNEVNGDFYLKHPSTAAPPAAATSISWSPLQSKKQPESEEADEKGGCSLNQPSTATPEAALTTTLISSPPSQSKEQPRESKETDESTSDDSTSDEDSDDDSTSDEDSDDDSTSDEDSEPSNSSFGKKAPVTMVSTSKEDEKHASQSESEVTNSVGSGERGKVLKMSVMEKNSESCNNRGKVLKTSIMENNSENRRKRGMVLKREGVRERYSLVSWLIKNQVLVPGTDVFCRGSNNVVKRGSLFSDGIVCDCCHVTFTVTGFEAHAACTRHRPSTSILLEDGRSLLECQREAQSSRDQTDNHCVAEANSEANNDNVCAICGFGGDIVLCDRCPSSFHLSCLGLDRVPDGDWFCPTCCCKVCYGPKCKQECADHNDNNILACVQCEQKFHFGCVKAIGFGPSDTENAKKKDWFCSVVCGNMVLCLKKLLGKPIMIADNITWTLLKNNASSDYDYDGGNFTSYEFSLNKRKLNSALGVLYQSFNPSIDAFSGRELIKDVVFSRDSKHNRLNFRGFYNVILEKMGEVVSVATIRIYGPKVAEVVFVATKEQHRKQGLCRLLMDELEKQLIRLGVESFVLHSSEDAINTWTKAFGFDRMTGKDKCQFIDNTFLEFQNSIMCLKLLNRPIWPYIARS 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04932 880 ProSiteProfiles Zinc finger PHD-type profile. 562 607 IPR019787 -
Trre5g04932 880 CDD NAT_SF 764 825 - -
Trre5g04932 880 MobiDBLite consensus disorder prediction 268 283 - -
Trre5g04932 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 607 668 IPR013083 -
Trre5g04932 880 MobiDBLite consensus disorder prediction 258 410 - -
Trre5g04932 880 MobiDBLite consensus disorder prediction 121 135 - -
Trre5g04932 880 MobiDBLite consensus disorder prediction 106 137 - -
Trre5g04932 880 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 754 844 IPR016181 -
Trre5g04932 880 Pfam Tify domain binding domain 489 540 IPR032308 -
Trre5g04932 880 MobiDBLite consensus disorder prediction 106 120 - -
Trre5g04932 880 SUPERFAMILY FYVE/PHD zinc finger 555 615 IPR011011 -
Trre5g04932 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 553 606 IPR013083 -
Trre5g04932 880 Gene3D - 726 848 - -
Trre5g04932 880 SMART PHD_3 613 665 IPR001965 -
Trre5g04932 880 SMART PHD_3 564 605 IPR001965 -
Trre5g04932 880 Pfam PHD-finger 564 606 IPR019787 -
Trre5g04932 880 MobiDBLite consensus disorder prediction 337 365 - -
Trre5g04932 880 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 724 858 IPR000182 GO:0016747
Trre5g04932 880 PANTHER PHD FINGER PROTEIN 12 445 870 IPR042163 GO:0003714|GO:0045892
Trre5g04932 880 Pfam Acetyltransferase (GNAT) family 762 840 IPR000182 GO:0016747
Trre5g04932 880 MobiDBLite consensus disorder prediction 296 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04932 Trre-Chr5 51031995 51034637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04932 460 812 PHD Transcription Factor Family AT5G58610 40.896 1.76e-81 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre5g04932 Acetyltransf_1 5.7e-10 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04932 - - tpra:123894286 1384.39