Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04930 ATGGTTGATCTTTTGTGCAAAGAAAATGAAACGGTTTTGGAAGTTGAAGAATGCTCAATGAATCAATTTAGTGTCTCAGAAGAAGAAGAAGAACATGTGAGATTGTTGATTCAGAAAGAGATTGCATTTGGGTTCAAAAAAGATGAAAATTTTCTGTTTGAAGATTCTGTCAAACGTGCTCGTTTGAATGCAATCTATTGGATTCTCAAAAAAACAGAAGCATTGGATTTTCACTTTGAAACAGCTTATTTATCAGTAACATATTTGGATCAATTCCTCTCAAAAAGATTCATTGATGGTGAGAAAGATTGGGCTATAAGATTGCTATCAATTGCATGTCTTTCTTTGGCTGCAAAAATGGAAGAGTACAATGTGCCAGGACTATCAAAGTTTCAATTGGATGATAATTATTTCTTTGATGGAAAAGTGGTTCAAAAAATGGAGCTTTTTGTTCTAAGTACATTGGATTGGAACATGGGTATTATCACTCCTTTTTCATTCCTTTCTTACTTCATTAAAATGTTCTGCAATGAATCGTCATCGTCATCAAATCCTATTGTTTCCAACACAATGCAACCAATTTTCACCGTAGTAATGGAAGAGATCAATCTAATGGATCACAAACCATCTGTTGTTGCAGCAGCTGCTACTTTAGTGGCATTGGATACAAAATTGGCCATAGAAGATGTGAGATTGAAAATGAATTCAATTTCTCAACATCCATTACTTGAACCGAATGATGTATTTGCATGCTACAATCTAATTCAAAGATTATATGAGGAGAAGATTAAAAGAGAAGAGCTTAAGGGTTTATGTACACCGAATTCTTCGGTTATTCGATCCAGACCAACTGACTATGCTGTTGCTATGACAGAGAAGAAGGCTCTCATTCACTGA 897 0.3467 MVDLLCKENETVLEVEECSMNQFSVSEEEEEHVRLLIQKEIAFGFKKDENFLFEDSVKRARLNAIYWILKKTEALDFHFETAYLSVTYLDQFLSKRFIDGEKDWAIRLLSIACLSLAAKMEEYNVPGLSKFQLDDNYFFDGKVVQKMELFVLSTLDWNMGIITPFSFLSYFIKMFCNESSSSSNPIVSNTMQPIFTVVMEEINLMDHKPSVVAAAATLVALDTKLAIEDVRLKMNSISQHPLLEPNDVFACYNLIQRLYEEKIKREELKGLCTPNSSVIRSRPTDYAVAMTEKKALIH 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04930 298 SUPERFAMILY Cyclin-like 22 159 IPR036915 -
Trre5g04930 298 SUPERFAMILY Cyclin-like 144 260 IPR036915 -
Trre5g04930 298 Pfam Cyclin, N-terminal domain 37 159 IPR006671 -
Trre5g04930 298 FunFam Cyclin-D5-1 56 160 - -
Trre5g04930 298 Gene3D - 155 277 - -
Trre5g04930 298 SMART cyclin_7 66 153 IPR013763 -
Trre5g04930 298 CDD CYCLIN_AtCycD-like_rpt1 60 157 - -
Trre5g04930 298 Pfam Cyclin, C-terminal domain 162 261 IPR004367 -
Trre5g04930 298 Gene3D - 54 154 - -
Trre5g04930 298 PANTHER CYCLINS 25 262 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04930 Trre-Chr5 50963606 50965107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04930 4 238 Core Cell Cycle Gene Families AT4G37630 37.647 2.35e-42 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04930 K18811 - gmx:100798728 309.686