Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04924 ATGGATCAAACACTTGAAGCTTTCCCTCATGGTGAATGGGAATGCTTTCAAAGAATGTTTGCAACTGAAGAACATGATGACTCACCACCACAATTACTTGATCAAAGCTCACTTCTACTTATGGAAGATCATGGAAACTTTGGAGTACAATCCATGTTTGATTCTCACAACAACTATAATACTTCACAAGAAACTGATCATAGCCACTACTTTGATTTTTCTAATCATATGGTAGCTAATAATGGTGACATATCAGAGAATTTTGATCACTGTCAAGTCCAACCTATTGTCTTTCCCGCCAAGCCGTTGAAGCTGAAAAGGATGCTTGATGTGCCAGAATTTCAAGTCCATGCAGAAGATAAGATAAACAAATGCGTGAATCCAAAGAAAAAATCTCATACTTCAAAAGATCTTCAAAGATGCGTGGCGAATGCAGAGTCCAAGAACAGCAAAAAGGTTGATAGAAATGGGAATAAGGCAGAAGAAACAAATGCAAGTGTAGATGGACATAGCTCTAGTGGTTATACCTCAGAGGAGCATAACATGTATGAGGAAAACAGTGGAGGAACTACTTCAGCATCTAAATCAACTATGTCTCTCAACTCAAATGGGAAAACAAGAGCTAATAGAGGATCAGCCACAGATCCTCAAAGCCTTTATGCAAGGAAAAGAAGGGAGAAAATAAACGAGAGACTAAGAACTCTACAAAATCTTGTACCAAACGGAACGAAGGTTGATATAAGCACAATGCTTGAAGATGCTATCCATTATGTGAAATTTTTGCAGCTCCAAATCAAGCTTCTAAGCTCTGATGATATGTGGATGTACGCCCCAATTGCTTATAATGGACTTGACATTGGAGTCAATCTCAACCAGAAAATTTCTCCACCACCATGA 897 0.3846 MDQTLEAFPHGEWECFQRMFATEEHDDSPPQLLDQSSLLLMEDHGNFGVQSMFDSHNNYNTSQETDHSHYFDFSNHMVANNGDISENFDHCQVQPIVFPAKPLKLKRMLDVPEFQVHAEDKINKCVNPKKKSHTSKDLQRCVANAESKNSKKVDRNGNKAEETNASVDGHSSSGYTSEEHNMYEENSGGTTSASKSTMSLNSNGKTRANRGSATDPQSLYARKRREKINERLRTLQNLVPNGTKVDISTMLEDAIHYVKFLQLQIKLLSSDDMWMYAPIAYNGLDIGVNLNQKISPPP 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04924 298 SMART finulus 218 267 IPR011598 GO:0046983
Trre5g04924 298 Pfam Helix-loop-helix DNA-binding domain 222 262 IPR011598 GO:0046983
Trre5g04924 298 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 35 270 IPR045843 GO:0003700|GO:0006355
Trre5g04924 298 CDD bHLH_AtIND_like 213 275 - -
Trre5g04924 298 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 212 261 IPR011598 GO:0046983
Trre5g04924 298 MobiDBLite consensus disorder prediction 147 161 - -
Trre5g04924 298 FunFam Basic helix-loop-helix transcription factor 213 270 - -
Trre5g04924 298 Gene3D - 210 269 IPR036638 GO:0046983
Trre5g04924 298 MobiDBLite consensus disorder prediction 162 216 - -
Trre5g04924 298 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 211 278 IPR036638 GO:0046983
Trre5g04924 298 MobiDBLite consensus disorder prediction 127 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04924 Trre-Chr5 50926558 50927961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04924 176 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 75.000 1.25e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre5g04924 HLH 1.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04924 - - mtr:25489956 431.024