Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04905 ATGAGTGGTCCATCGCGAGAAGAAGATTCAAAGGAAGAGGTAAAAGAAGACGAAGAAGGTAACCGGTTATTGGCGGTAGAAGGTGAAGGTGAATCGGAGGAAGAAGAAGAAGCTGCATATGAATCCGGCGAGAAAATCGTGGTGGTAGATTTCGAATTTGATTCAATAGACGATTCAACCGTTCCACCTTTCTCATGGAAAAAGCTATGGATGTTTACTGGACCTGGATTCTTGATGAGTATTGCTTTTTTGGATCCAGGGAATTTGGAAGGGGATCTACAAGCTGGAGCAATTGCAGGTTATTCTCTTCTATGGTTATTGATGTGGGCGACTTTTATGGGATTATTGATTCAATTGCTTTCGGCGAGGGTCGGTGTTGCTACTGGTCGTCATCTAGCTGAGCTTTGTAGAGATGAGTATCCTAATTGGGCTCGTTATGTTCTTTGGTTTATGGCTGAACTTGCTTTGATTGGTGCTGATATTCAAGAAGTTATTGGTAGTGCTATTGCTATTCAGATTCTTAGCCGTGGTGTTTTGCCTCTTTGGGCTGGTGTTCTTATCACTGCTTCTGATTGCTTTTTCTTTCTTTTTCTTGAGAACTATGGAGTGAGGAAGTTGGAAGCTGCTTTTGCAGTTCTCATCGGTACCATGGCTCTTTCTTTTGCCTGGATGTTTGGTGACACAAAACCTAGTGGAAAAGAGCTCGTCATGGGCATTTTGATTCCAAGACTTAGCTCAAAAACAATCCGTCAGGCTGTGGGCGTTGTGGGTTGTGTGATTATGCCTCACAATGTATTTCTTCATTCTGCTTTAGTGCAGTCAAGGAAGATTGATCCGAATAAGAAAGGTCGGGTGCAAGAGGCTCTTAATTACTATAATATTGAGTCAACAGTTGCACTTGCAGTCACCTTCATGATCAATCTGTTTGTCACAACAGTTTTTGCTAAGGGTTTCTATGGTACAAAGCAGGCAAATAGCATAGGATTGGTAAATGCAGGGCAGTATCTTGAGGAAAAATATGGAGGTGGACTCTTCCCTATTCTTTATATATGGGGGATCGGGTTATTGGCAGCTGGACAAAGTAGCACTATCACTGGCACGTATGCTGGGCAATTCATAATGGGGGGTTTCCTCAACCTTCGTTTAAAAAAATGGTTGAGAGCATTGATCACTCGGAGTTGTGCAATTGTGCCAACTATAATTGTAGCTATTGTTTATAACAGCTCAGAAGGCTCATTGGATGTTTTGAATGAATGGCTTAATGTGCTCCAGTCCGTACAAATTCCCTTTGCATTGATTCCCCTCCTCACGTTGGTCTCCAAAGAGCGTATCATGGGGTCCTTTAAGGTTGGGCCTGTTCTTGAGAGGGTGGCTTGGACGGTTGCTGCACTGATAATAGTAATTAATGGGTATCTCTTAGTAGATTTCTTCCTTTCTGAGGTGAACGGCGTACTATTTGCTTTTGTAGCCTGCTCTTGCACAGTCTCTTATATTGCATTCATTGTATATTTAATTTCACAAAGTGGAATTCTTCCTTCCTCTTGGGTTGATCGATTTCCAAAGGGTTTTTCTTTGACTGGGAATTAA 1587 0.4216 MSGPSREEDSKEEVKEDEEGNRLLAVEGEGESEEEEEAAYESGEKIVVVDFEFDSIDDSTVPPFSWKKLWMFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATFMGLLIQLLSARVGVATGRHLAELCRDEYPNWARYVLWFMAELALIGADIQEVIGSAIAIQILSRGVLPLWAGVLITASDCFFFLFLENYGVRKLEAAFAVLIGTMALSFAWMFGDTKPSGKELVMGILIPRLSSKTIRQAVGVVGCVIMPHNVFLHSALVQSRKIDPNKKGRVQEALNYYNIESTVALAVTFMINLFVTTVFAKGFYGTKQANSIGLVNAGQYLEEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVAIVYNSSEGSLDVLNEWLNVLQSVQIPFALIPLLTLVSKERIMGSFKVGPVLERVAWTVAALIIVINGYLLVDFFLSEVNGVLFAFVACSCTVSYIAFIVYLISQSGILPSSWVDRFPKGFSLTGN 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04905 528 NCBIfam Nramp family divalent metal transporter 74 443 - -
Trre5g04905 528 PRINTS Natural resistance-associated macrophage protein signature 203 224 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g04905 528 PRINTS Natural resistance-associated macrophage protein signature 359 378 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g04905 528 PRINTS Natural resistance-associated macrophage protein signature 387 404 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g04905 528 PRINTS Natural resistance-associated macrophage protein signature 252 275 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g04905 528 PRINTS Natural resistance-associated macrophage protein signature 421 440 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g04905 528 PRINTS Natural resistance-associated macrophage protein signature 178 197 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g04905 528 PRINTS Natural resistance-associated macrophage protein signature 148 174 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g04905 528 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 67 445 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g04905 528 Pfam Natural resistance-associated macrophage protein 90 451 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g04905 528 Hamap Divalent metal cation transporter MntH [mntH]. 56 477 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g04905 528 MobiDBLite consensus disorder prediction 1 28 - -
Trre5g04905 528 MobiDBLite consensus disorder prediction 1 41 - -
Trre5g04905 528 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 44 506 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04905 Trre-Chr5 50782164 50786852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04905 7 508 Inorganic Solute Cotransporters AT1G47240 80.709 0.0 834
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04905 K21398 - gmx:100795013 892.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04905 5 50782164 50786852 Trre5g04905 5 50782164 50786852 ECH