Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04904 ATGGGGAGAGTGAAACTTCAGATCAAGAAAATTGAGAACACAACAAATAGACAGCACATTCGAAAGCTTCTCCGTAAGTTGAAAGTTGAAACCGATCAAATTGGTCAAGTTCCTAGCCCTATGGTTAAAGACTCTCAACTCAAGGAGGTTCAAAGAGAAATTTTGATTTGCAAGACTCAATTGGAAGAGATGAAGAATCGACTAAGGGCATTTGAAGGAGATCCTTCTGAGATCACCACATTGTATGAAGCTGAATATCGTGAACAAGTACTTCAGGAAACTCTACAACGAGTGCAACTGCGAAAATGCTTTTTGGAGGAAGAACATATTTCTCATGCATCTCCACAGGTACATCTTACAAAAACTGTAGATGTAGATGGCTTTGTTGCCGGAACAACAGAGAATGCATTAGGCTGGTTTCCGCAGGGAGATACCACCGATCAGATTCTGAACTTTGTTAATGCTTATGGCCCTAATCCTCTCAGTGATCAACAATCAATGAGTACTATTGTTAATATGGTAACGCCAACTTCGACCCTTATGCATTCTGCAAACATCAATCATGATTTCCAAATTAGTCCTGGGGATGGTACAAAGGCTGACATCAATAATACACTGAATACTCAGTTTGGACAAGTTACAGACAACAATTTGTCCTCTTGGGAGCACCTCCACCATTTAGAGAGTGCTGCATTGTCAGTTGCAGATACAAGAGAAGGACAACTACTGGAACAATATCTTTCTCAAGTTGCCATGACAAATGTTTTTATGAGTAATCAAGATCAACTTCAAACATGA 798 0.3972 MGRVKLQIKKIENTTNRQHIRKLLRKLKVETDQIGQVPSPMVKDSQLKEVQREILICKTQLEEMKNRLRAFEGDPSEITTLYEAEYREQVLQETLQRVQLRKCFLEEEHISHASPQVHLTKTVDVDGFVAGTTENALGWFPQGDTTDQILNFVNAYGPNPLSDQQSMSTIVNMVTPTSTLMHSANINHDFQISPGDGTKADINNTLNTQFGQVTDNNLSSWEHLHHLESAALSVADTREGQLLEQYLSQVAMTNVFMSNQDQLQT 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04904 265 Coils Coil 47 67 - -
Trre5g04904 265 ProSiteProfiles MADS-box domain profile. 1 18 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04904 Trre-Chr5 50772099 50774363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04904 16 145 Type I MADS-box Gene Family AT1G22130 31.298 5.53e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04904 - - tpra:123918189 418.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04904 5 50772099 50774363 Trre5g04904 5 50772099 50774363 ECH