Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04902 ATGAATCATTACTCAAAACTATCAACAGGTCGAATCCAATTAAGCTTTATCTTTCTCCTCGTATCAATAATTTTCACTTGGAGATTCTTCTCTCTTGTTCCTTTTTCTGCATCCAAGATATCTAAGAAGAAGAACAAGAAAAACCTTACTAGTGCCGAAACTGACAATGGTGGTTCAATTGTTTCTGAAGCCTACAATTATCTTCTCTCAATGGAGAAAAAGAGAAGTCCAATGATAGATTACATAGAGAGAGTTCAGACAGATATTGATCCAAATTGGAGAGGAAAATGTATCGATTGGGTAGTAAGCGTCGTCGATTATTTCAACCTTCTTCCTGATACCCTTTTTCTTGCTGTTTCGTGCATAGATAGGTTCTTATCTTTTAAACCTATAAGCAGCTCCAAGCTTCACTTGTTGTGTGTTTCATCCATGTTCATTGCATCGAAGTATGAAGAAACTTTCCCACCCCGGTTGGAAAAATTCTGCCGTGTTATCAAGAATAAATACAGCAAAGAAGAGATTTTAGAGATGGAAATTGACATACTCAAGACCCTAAACTTTGACATGGGCAACCCCACTACTAAGACATTTTTAAGGGCGTTTATTGAGATTGCCTGCGAGAAAAATGACGATTTGAGTTTGCAGTTTGAGTTCTTAAGTAACTATCTTGCTGAGCTAAGTTTATTGGATTATGATTGTGTGATGTTATTGCCTTCTTTGGTGGCCGCGTCTGTCACGTTTCTTGCTAGATTCATTGTTTGGCCTGAAACTTATCCATGGACTTCATCCTTGCAAGAATACACAGGATATAAACCAGTCGAATTGAAAGAATGTGTTATCATCTTACATGATTTGTATATGGCGAGAAGAAAAGGGAGATTACACTGTAGTCGACAGAAATACAACAGGCAAAAGTATAAATGTGTGGCAGACCTGCCTTCTCCTACTTGTTTACCAAGTTATCTGTTTGAAGTAGAGCGAGGGAGTTGGATGAAACTGTTATTTTCTTAA 1011 0.3749 MNHYSKLSTGRIQLSFIFLLVSIIFTWRFFSLVPFSASKISKKKNKKNLTSAETDNGGSIVSEAYNYLLSMEKKRSPMIDYIERVQTDIDPNWRGKCIDWVVSVVDYFNLLPDTLFLAVSCIDRFLSFKPISSSKLHLLCVSSMFIASKYEETFPPRLEKFCRVIKNKYSKEEILEMEIDILKTLNFDMGNPTTKTFLRAFIEIACEKNDDLSLQFEFLSNYLAELSLLDYDCVMLLPSLVAASVTFLARFIVWPETYPWTSSLQEYTGYKPVELKECVIILHDLYMARRKGRLHCSRQKYNRQKYKCVADLPSPTCLPSYLFEVERGSWMKLLFS 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04902 336 SMART cyclin_7 196 284 IPR013763 -
Trre5g04902 336 SMART cyclin_7 99 183 IPR013763 -
Trre5g04902 336 SUPERFAMILY Cyclin-like 61 189 IPR036915 -
Trre5g04902 336 Pfam Cyclin, C-terminal domain 192 314 IPR004367 -
Trre5g04902 336 SUPERFAMILY Cyclin-like 192 316 IPR036915 -
Trre5g04902 336 Gene3D - 185 319 - -
Trre5g04902 336 Pfam Cyclin, N-terminal domain 64 189 IPR006671 -
Trre5g04902 336 FunFam Cyclin A1 179 311 - -
Trre5g04902 336 Gene3D - 78 184 - -
Trre5g04902 336 SMART Cyclin_C_2 192 315 IPR004367 -
Trre5g04902 336 PANTHER CYCLINS 57 302 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04902 Trre-Chr5 50765420 50767248 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04902 58 324 Core Cell Cycle Gene Families AT5G43080 50.562 1.89e-94 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04902 K06627 - gmx:100776007 317.775