Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04900 ATGGAGACTCGTGCTGCAAGAAAGAGGGCTAATTCGAGCTCAAACGCTGAACCAATTGTGTTGAACAACAAAAAACAAAGGGTTGTTTTGGGTGAACTACCTGATCTTAATTGTTCTGAAAATGTTCAATTTTCTAATGAAAAATTTCAATCTTGGAAGAATCCCAAGAGAGGTGTTTGTTTGTTTGAGAATTTTAAATCGGATAAGCCGATTTTCGGTAACAAAAAAGCAGAATTTGTTGATGAACAAATTGGTGAGCCTTATGCATCTGATATATCCAAATATCTTCGTTCAATGGAGAAAAAGAGAAGACCTATGGTTGGATACATTGATAAAGTTCAGAGAGGTGTTACTTCAAACATGAGAGGAATTTTGATTGATTGGTTAGTTGAAGTTGCTGATGAATACAAGCTTCTCCCAGAAACCCTTCATCTTTCGGTTTCTTACATCGATAGGTTCCTATCTCTTAATGTTATTAACAGATCTAACCTTCAGTTGCTTGGTGTTTCATCTATGCTCATTGCATCAAAGTATGAAGAAATCACCCCACCAAAGGCTGTAGATTTCCGACAAATTACCGATAACACTTATCAGCTGAAACAAGTTATTAAGATGGAAGCTGATATACTCAAGTCACTGAATTTTGAAATGGGGAATCCTCATGTTTACACATTTCTGAAGGAGTTTATTGGATTTGCTACTGAAAATCAAAAGACTTCAAAACTGCAAATGGAATTTCTGTGTAACTATCTTGCTGAGTTAAGCTTGTTGGAATATGAATGTATAAGATTCTTGCCTTCTGTGGTGGCTGCATCTGTTATATTTCTCGCTAGATTCATCATCCGTCCCGATGTATATCCTTGGACTTCATCATTGAGTGATAACTTGGGTTATAAATCCGATGAGCTCGAAGAATGTGTTCTCATTTTACATGATTTGTATTTGTCAAGAAAGGCTGCATCATTGAAAGCTGTTAGGGAGAAATACAAACAACATAAGTTCAAATCTGTGGCAAACTTGCCTGTACCACCAGAGGTACCAAACCATTACTTTGAAGAAGAGTGA 1065 0.3653 METRAARKRANSSSNAEPIVLNNKKQRVVLGELPDLNCSENVQFSNEKFQSWKNPKRGVCLFENFKSDKPIFGNKKAEFVDEQIGEPYASDISKYLRSMEKKRRPMVGYIDKVQRGVTSNMRGILIDWLVEVADEYKLLPETLHLSVSYIDRFLSLNVINRSNLQLLGVSSMLIASKYEEITPPKAVDFRQITDNTYQLKQVIKMEADILKSLNFEMGNPHVYTFLKEFIGFATENQKTSKLQMEFLCNYLAELSLLEYECIRFLPSVVAASVIFLARFIIRPDVYPWTSSLSDNLGYKSDELEECVLILHDLYLSRKAASLKAVREKYKQHKFKSVANLPVPPEVPNHYFEEE 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04900 354 Gene3D - 91 339 - -
Trre5g04900 354 Pfam Cyclin, N-terminal domain 91 217 IPR006671 -
Trre5g04900 354 Pfam Cyclin, C-terminal domain 220 341 IPR004367 -
Trre5g04900 354 PIRSF Cyclin_A_B_D_E 2 350 IPR046965 GO:0016538|GO:0044772
Trre5g04900 354 SUPERFAMILY Cyclin-like 220 345 IPR036915 -
Trre5g04900 354 FunFam G2/mitotic-specific cyclin 105 216 - -
Trre5g04900 354 Gene3D - 105 218 - -
Trre5g04900 354 PANTHER CYCLINS 57 331 IPR039361 -
Trre5g04900 354 FunFam Cyclin superfamily protein, putative 217 289 - -
Trre5g04900 354 SUPERFAMILY Cyclin-like 84 217 IPR036915 -
Trre5g04900 354 SMART cyclin_7 224 312 IPR013763 -
Trre5g04900 354 SMART cyclin_7 127 211 IPR013763 -
Trre5g04900 354 SMART Cyclin_C_2 220 343 IPR004367 -
Trre5g04900 354 ProSitePatterns Cyclins signature. 122 153 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04900 Trre-Chr5 50759912 50761847 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04900 3 353 Core Cell Cycle Gene Families AT5G43080 54.416 1.84e-128 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04900 K06627 - gmx:100787417 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04900 5 50759912 50761847 Trre5g04900 5 50759912 50761847 ECH