Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04899 ATGAGTACAAATGACCCGAAGTCGTTGCGGGGATCAGTTGTTTATCATAAGTATGGTAGAAACTTAGAGGAGAATGTCAGAGGTAGTTCTTTGTGGTGGAGCGATTTGAAGCTCGCTGTAAAGTTACCAGGGGGAGGTGGCATAGGGTGGTTCAACGAGCATTTAAGGAAGGAAGTAAGGGATGGTAAGAACACTAGCTTTTGGTCGGACCCTTGGATAGACGGAGTTACACTGCGGCATCATTTCGACAGGCTATTTGAAGTAGCAGCAGAAAAAGAAATTTCAGTGGCTGACATGATTGGTGAAGTGGAACTGGCGGAGGCAGCTGTTTCTTTGGGAGGAGGAGATGTTGGAAGCTTATGGTTATTTTCAGTTTTGGTTTTGTATCAGCTGCCGCAGGTCGCGTGTAACTGGGCGCATCAGTTTCTGTTCAGCTGTCCCGCGTGCAGTGTCCAATTCTATTATGCAGAGCTGGTTGTATCTCACAAGGCCACATTCGGTTTCCTCAGGCCGGATGCTAGTGATAGCTCCATATGTCTTGAGTCGTTTGTGACACAGCAAGGGATCCCATTGCGTTGTAGAATATACAACAAGGTCTCTGTGCTTCATGGACATAAAGTCGAAAATCCGCATGGAAACTTTTTGATGCCGCCACCACCTCCAACTCAATATGAGAGTCCTCATTCAAGAGAACTGCCTCACAGACAAGTATCTTCAAGTTCAAGTGAAGCTGCAAAACCGAAAGACGGTGACCCTAAGCTATTCGGTTTCTCACTTCTCAGTAGCCCTACAATGCCAGAAACTTCCATGTCACAAAGAAGTAATACTAGTGAGCAAGTTAGTCACATGCAAATTTCATCACAGCAATGTAATACATTTGAAAATGATCAGAAGTCTGAGCATTCAAAGTTCTCAAAACCAGCTGCTGATAATCCAGTTGTAGTTGACGATCAAGATAAGCTGTTGCAAACATCTCAGACTCATGTTAAAGATGTTCAACACAAACCACAAACTGGTTCTGCTAGAAGTTGCACGAAAGTTCACAAGAAAGGGATTGCACTTGGTAGATCGGTAGACCTTACCAAGTTTAGTGACTATGACGAATTGACCGCTGAATTGGACCAGCTGTTTGAATTTGGAGGTGAATTAATATCTCCACAAAAGGATTGGCTTGTTGTCTTCACCGATAATGAGGGTGACATGATGCTTGTTGGCGATGACCCATGGCAGGAGTTTTGTTCGATGGTTCGCAAAATTTACATCTACCCGAAAGAGGAGATTCAGAAAATGAGCCCCGGTACCTTGAGTTCAAAAAATGAAGAGAATCATTCAGCTACCGAAGGCGCAGATGCACAAGAAACCAAGTCTCAGCTGAATCAATCAGCTTCAGATGCTAGATTGTTTGGTTGA 1410 0.4411 MSTNDPKSLRGSVVYHKYGRNLEENVRGSSLWWSDLKLAVKLPGGGGIGWFNEHLRKEVRDGKNTSFWSDPWIDGVTLRHHFDRLFEVAAEKEISVADMIGEVELAEAAVSLGGGDVGSLWLFSVLVLYQLPQVACNWAHQFLFSCPACSVQFYYAELVVSHKATFGFLRPDASDSSICLESFVTQQGIPLRCRIYNKVSVLHGHKVENPHGNFLMPPPPPTQYESPHSRELPHRQVSSSSSEAAKPKDGDPKLFGFSLLSSPTMPETSMSQRSNTSEQVSHMQISSQQCNTFENDQKSEHSKFSKPAADNPVVVDDQDKLLQTSQTHVKDVQHKPQTGSARSCTKVHKKGIALGRSVDLTKFSDYDELTAELDQLFEFGGELISPQKDWLVVFTDNEGDMMLVGDDPWQEFCSMVRKIYIYPKEEIQKMSPGTLSSKNEENHSATEGADAQETKSQLNQSASDARLFG 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04899 469 FunFam Auxin response factor 337 431 - -
Trre5g04899 469 MobiDBLite consensus disorder prediction 261 295 - -
Trre5g04899 469 SUPERFAMILY CAD & PB1 domains 344 419 - -
Trre5g04899 469 MobiDBLite consensus disorder prediction 449 469 - -
Trre5g04899 469 Gene3D - 338 431 - -
Trre5g04899 469 MobiDBLite consensus disorder prediction 210 313 - -
Trre5g04899 469 ProSiteProfiles PB1 domain profile. 342 424 IPR000270 GO:0005515
Trre5g04899 469 Pfam AUX/IAA family 388 430 IPR033389 -
Trre5g04899 469 Pfam AUX/IAA family 262 378 IPR033389 -
Trre5g04899 469 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 238 431 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre5g04899 469 MobiDBLite consensus disorder prediction 431 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04899 Trre-Chr5 50756862 50759299 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04899 171 465 B3 DNA Binding Superfamily AT5G62000 46.205 2.90e-71 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Trre5g04899 AUX_IAA 3.2e-05 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04899 - - lja:Lj4g3v2881950.1 389.423