Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04898 ATGGAGACTCGCGCCTCAAAGAAAAGAGCAAACACCGTTCAACAACCACCACTTGTCGTTGTTCCCAAAAGACAGAGAGTTGTTTTGGGTGAAATTCCCGATCTCAGTTTTCCCCAATTTCAGCCTGCACAGAAACTCCAAGTTCGGAGAAATCCTAACCTCAACAAATCAGCAACAACTACTCTTCCTTCTCTCGATTCCAATTTGTATTCTGATAAGCCAGTTTATAACAAAAGCAATGCTAAACGTGACAATCAAAACATCATTGAGCCTTACGTATCCGATATATTCGATTATCTTCGCACAATGGAGAATAAGAGAAGACCAATGGTTGGTTATATTAAAAATGTTCAGTTAGACATTACTTCAAACATGAGGGGGACATTGGTTGATTGGTTAGTTGAGGTTACCGACGAGTACAAACTTCTCCCCGAAACCCTTCATCTCTCTGTTTCCTACATTGATAGATTCCTATCGCTTAACACTCTCAACAGAAGAAAACTTCAGTTGCTCGGTGTTTCCTCCATGCTTGTTGCATCGAAGTATGAAGAAATCACCCCACCCAAAGCTGTGGATTTCTGCGAAATTACTGATAACAACTACGACTTGGAAGAGGTTATAAAGATGGAAGCCGACATACTCAAGTCCCTAAATTTTGAAATGGGCAACCCTAATGTCGTCACATTTCTAAAGAGGTTTGTTGGGATTGCTTCCGAGAATAAAAAGACTTCTAATTTGCAGTTTGAGTATCTGTGCAACTATCTTGCCGAGTTAAGCTTGTTGGACTATGAATGTATAAGATTCTTGCCTTCTATTGTGGCTGCATCGGTTATATTTCTTGCCAGATTTATTATCCGGCCTAGAGTACAGCATTGGACTTCATACTTGTGTGAATGCCTTGGTTACAAATCTGCTGAGTTGGAAGAATGCGTTCTCATTTTACATGACTTGTATTTGTCACGAAGGGCAGCATCTTTTAAAGCTGTTCGCGACAAATACAAGCAGAAGAAGTTCAAATATGTGGCAAACTTGCCTTCCCCTTCAGAGATACCAGTTAATTACTTTGAAGAAGAGTGA 1077 0.402 METRASKKRANTVQQPPLVVVPKRQRVVLGEIPDLSFPQFQPAQKLQVRRNPNLNKSATTTLPSLDSNLYSDKPVYNKSNAKRDNQNIIEPYVSDIFDYLRTMENKRRPMVGYIKNVQLDITSNMRGTLVDWLVEVTDEYKLLPETLHLSVSYIDRFLSLNTLNRRKLQLLGVSSMLVASKYEEITPPKAVDFCEITDNNYDLEEVIKMEADILKSLNFEMGNPNVVTFLKRFVGIASENKKTSNLQFEYLCNYLAELSLLDYECIRFLPSIVAASVIFLARFIIRPRVQHWTSYLCECLGYKSAELEECVLILHDLYLSRRAASFKAVRDKYKQKKFKYVANLPSPSEIPVNYFEEE 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04898 358 SMART cyclin_7 228 316 IPR013763 -
Trre5g04898 358 SMART cyclin_7 131 215 IPR013763 -
Trre5g04898 358 FunFam Cyclin superfamily protein, putative 221 293 - -
Trre5g04898 358 ProSitePatterns Cyclins signature. 126 157 IPR006671 -
Trre5g04898 358 PANTHER CYCLINS 78 335 IPR039361 -
Trre5g04898 358 Pfam Cyclin, N-terminal domain 95 221 IPR006671 -
Trre5g04898 358 PIRSF Cyclin_A_B_D_E 2 355 IPR046965 GO:0016538|GO:0044772
Trre5g04898 358 Gene3D - 109 222 - -
Trre5g04898 358 Gene3D - 95 343 - -
Trre5g04898 358 SMART Cyclin_C_2 224 347 IPR004367 -
Trre5g04898 358 FunFam G2/mitotic-specific cyclin 109 220 - -
Trre5g04898 358 SUPERFAMILY Cyclin-like 224 349 IPR036915 -
Trre5g04898 358 Pfam Cyclin, C-terminal domain 224 346 IPR004367 -
Trre5g04898 358 SUPERFAMILY Cyclin-like 84 221 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04898 Trre-Chr5 50753538 50755175 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04898 3 357 Core Cell Cycle Gene Families AT5G43080 50.704 8.58e-125 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04898 K06627 - gmx:100787417 413.69