Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04896 ATGGAGACTCGCGCCTCAAAGAAAAGAGCAAACGCCAATCAACAACCACCATTTGTCATTGTTCCCAAAAGACAAAGAGTTGTATTGGGTGAAATTCCTGATCTCAGTTTCCCCCAATTTCAACCCAAACAAAAACCCCAAGTTCAGAAAAACCCTAACCTTAACAAATCAACAATAACAACAATAACCTTTCCTTCAATTGATTCCAATTTGGATAAGTCACTTCCAAGAAACAACAATCAAATACGTTCCAATGAACATATTGACGAGTCTTATGTATCCGACATTTTCGATTATCTTCGCACAATGGAGATGCAGAAAAAGAGAAGACCAATGGTTGGTTATATGGAGAATGTTCAGTTAGACATTACATCAAACATGAGGGGGACATTGGTTGATTGGTTAGTTGAGGTTGCTGACGAATACAAACTTCTCCCCGAAACCCTTCATCTCTCTGTTTCCTACATCGATCGGTTCCTATCTATTCAACCAGTCAAAAGATCCAAATTTCAGCTGCTCGGTGTTTCCTCTATGCTCGTTGCATCAAAGTATGAAGAAATCACCCCACCAAAGGCGGCGGATTTCTGCCAAATTACTGATAACAGCTATCATCTAGAAGAGGTCTTAAAGATGGAGGCCGACATACTCAAGTCTCTTAATTTTGAAATGGGCAGCCCTAATGTCATCACATTTCTAAAGAGATTTGTTGGGATTGCTTCCGATAATCCAAATACTTCTAATTTGCAGTTTGAGTATCTGTGCAACTATCTCGCCGAGTTAAGCTTGTTGGACTATGAGTGTATAAGATTCTTGCCTTCTGTAGTGGCTGCATCGGTTATATTTCTTGCCAAATTTATTATCCAGCCTGGAGTAAATCCATGGACTTCATCCCTGTGTGAATGCTTGGGATATGAATCGGCTGATTTGGAAGAGTGTGTTAGAATGTTACATGACTTGTATTTGTCGAGAAGGGCAGCATCCTTCAAAGCTGTTCGTGACAAATATAAGCAGAACAAGTTCAAATGTGTGGCAAACTTGCCTTCCCCTCCTGAGGTGCCAAACCATTACTATTTAATCTATTGCTGA 1086 0.4015 METRASKKRANANQQPPFVIVPKRQRVVLGEIPDLSFPQFQPKQKPQVQKNPNLNKSTITTITFPSIDSNLDKSLPRNNNQIRSNEHIDESYVSDIFDYLRTMEMQKKRRPMVGYMENVQLDITSNMRGTLVDWLVEVADEYKLLPETLHLSVSYIDRFLSIQPVKRSKFQLLGVSSMLVASKYEEITPPKAADFCQITDNSYHLEEVLKMEADILKSLNFEMGSPNVITFLKRFVGIASDNPNTSNLQFEYLCNYLAELSLLDYECIRFLPSVVAASVIFLAKFIIQPGVNPWTSSLCECLGYESADLEECVRMLHDLYLSRRAASFKAVRDKYKQNKFKCVANLPSPPEVPNHYYLIYC 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04896 361 SMART cyclin_7 230 318 IPR013763 -
Trre5g04896 361 SMART cyclin_7 133 217 IPR013763 -
Trre5g04896 361 PANTHER CYCLINS 72 343 IPR039361 -
Trre5g04896 361 SUPERFAMILY Cyclin-like 88 223 IPR036915 -
Trre5g04896 361 FunFam G2/mitotic-specific cyclin 111 222 - -
Trre5g04896 361 PIRSF Cyclin_A_B_D_E 2 357 IPR046965 GO:0016538|GO:0044772
Trre5g04896 361 Gene3D - 109 224 - -
Trre5g04896 361 SMART Cyclin_C_2 226 349 IPR004367 -
Trre5g04896 361 ProSitePatterns Cyclins signature. 128 159 IPR006671 -
Trre5g04896 361 Gene3D - 95 345 - -
Trre5g04896 361 Pfam Cyclin, C-terminal domain 226 348 IPR004367 -
Trre5g04896 361 Pfam Cyclin, N-terminal domain 95 223 IPR006671 -
Trre5g04896 361 FunFam Cyclin superfamily protein, putative 223 295 - -
Trre5g04896 361 SUPERFAMILY Cyclin-like 226 350 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04896 Trre-Chr5 50742114 50743873 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04896 3 353 Core Cell Cycle Gene Families AT5G43080 49.716 4.80e-120 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04896 K06627 - gmx:547779 422.55