Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04895 ATGGAGACTCGCGCCTCAAAGAAAAGAGCAAACGCCAATCAACAACCACCATTTGTCATTGTTCCCAAAAGACAAAGAGTTGTATTGGGTGAAATTCCTGATCTCAGTTTCCCCCAATTTCAACCCAAACAAAAACCCCAAGTTCAGAAAAACCCTAACCTTAACAAATCAACAATAACAACAATAACCTTTCCTTCAATTGATTCCAATTTGGATAAGTCACTTCCAAGAAACAACAATCAAATACGTTCCAATGAACATATTGACGAGTCTTATGTATCCGACATTTTCGATTATCTTCGCACAATGGAGAAAAAGAGAAGACCAATGGTTGGTTATATGGAGAATGTTCAGTTAGACATTACATCAAACATGAGGGGGACATTGGTTGATTGGTTAGTTGAGGTTGCTGACGAATACAAACTTCTCCCCGAAACCCTTCATCTCTCTGTTTCCTACATCGATCGGTTCCTATCTATTCAACCAGTCAAAAGATCCAAATTTCAGCTGCTCGGTGTTTCCTCTATGCTCGTTGCATCAAAGTATGAAGAAATCACCCCACCAAAGGCGGCGGATTTCTGCCAAATTACTGATAACAGCTATCATCTAGAAGAGGTCTTAAAGATGGAGGCCGACATACTCAAGTCTCTTAATTTTGAAATGGGCAGCCCTAATGTCATCACATTTCTAAAGAGATTTGTTGGGATTGCTTCCGATAATCCAAATACTTCTAATTTGCAGTTTGAGTATCTGTGCAACTATCTCGCCGAGTTAAGCTTGTTGGACTATGAGTGTATAAGATTCTTGCCTTCTGTAGTGGCTGCATCGGTTATATTTCTTGCCAAATTTATTATCCAGCCTGGAGTAAATCCATGGACTTCATCCCTGTGTGAATGCTTGGGATATGAATCGGCTGATTTGGAAGAGTGTGTTAGAATGTTACATGACTTGTATTTGTCGAGAAGGGCAGCATCCTTCAAAGCTGTTCGTGACAAATATAAGCAGAACAAGTTCAAATGTGTGGCAAACTTGCCTTCCCCTCCTGAGGTGCCAAACCATTACTATTTAATCTATTGCTGA 1080 0.4009 METRASKKRANANQQPPFVIVPKRQRVVLGEIPDLSFPQFQPKQKPQVQKNPNLNKSTITTITFPSIDSNLDKSLPRNNNQIRSNEHIDESYVSDIFDYLRTMEKKRRPMVGYMENVQLDITSNMRGTLVDWLVEVADEYKLLPETLHLSVSYIDRFLSIQPVKRSKFQLLGVSSMLVASKYEEITPPKAADFCQITDNSYHLEEVLKMEADILKSLNFEMGSPNVITFLKRFVGIASDNPNTSNLQFEYLCNYLAELSLLDYECIRFLPSVVAASVIFLAKFIIQPGVNPWTSSLCECLGYESADLEECVRMLHDLYLSRRAASFKAVRDKYKQNKFKCVANLPSPPEVPNHYYLIYC 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04895 359 ProSitePatterns Cyclins signature. 126 157 IPR006671 -
Trre5g04895 359 PANTHER CYCLINS 72 341 IPR039361 -
Trre5g04895 359 SMART cyclin_7 228 316 IPR013763 -
Trre5g04895 359 SMART cyclin_7 131 215 IPR013763 -
Trre5g04895 359 SMART Cyclin_C_2 224 347 IPR004367 -
Trre5g04895 359 Pfam Cyclin, C-terminal domain 224 346 IPR004367 -
Trre5g04895 359 Gene3D - 109 222 - -
Trre5g04895 359 FunFam G2/mitotic-specific cyclin 109 220 - -
Trre5g04895 359 FunFam Cyclin superfamily protein, putative 221 293 - -
Trre5g04895 359 SUPERFAMILY Cyclin-like 88 221 IPR036915 -
Trre5g04895 359 Pfam Cyclin, N-terminal domain 95 221 IPR006671 -
Trre5g04895 359 PIRSF Cyclin_A_B_D_E 2 355 IPR046965 GO:0016538|GO:0044772
Trre5g04895 359 SUPERFAMILY Cyclin-like 224 348 IPR036915 -
Trre5g04895 359 Gene3D - 95 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04895 Trre-Chr5 50742114 50743873 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04895 3 351 Core Cell Cycle Gene Families AT5G43080 50.000 1.40e-121 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04895 K06627 - gmx:100787417 421.009