Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04894 ATGGAGACTCGCGCCTCAAAGAAGAGACCAAACACCAATCAACAACCACAACAAGTCATTGTTCCTAAAAGGCAGAGAGTCGTATTGAAAGAATTTCCTTCCCTTGATTTCAATTTCGATAAGCCTGTTTATAAAAGAAACAATGTCAAACGTGACAATCAACACATCATTGAGCCTTACGTATCCGATATATTCGATTATCTTCGCACAATGGAGAATAAGAGAAGACCAATGGTTGGTTATATTGAGAATGTTCAGTTAGACATTACATCAAACATGAGGGGGACATTGGTTGATTGGTTAGTTGAGGTTGCCGACGAATACAAACTTCTCCCCGAAACCCTATATCTCTCTGTTTCCTACATTGATAGATTCCTATCTCTTAACACTCTCAACAGAAAAAAACTTCAGTTGCTTGGTGTTTCCTCCATGCTCATTGCATCGAAGTATGAAGAAATCACCCCACCAAAGGCTGTAGATTTTCGCCAAATTACTGATAACACCTATGACCTCAAAGAGGTTTTAACAATGGAAGCTGACATACTCAAGTCTCTAAATTTTGAAATGGGCAACCCTAATGTTTATACATTTCTGAAGAGGTTTGTTGGGATTGCTTCCGAGAATCGAAAGAATTCCAATTTGCAGTTTGAATATCTATGCAACTATCTTGCCGAGTTAAGCTTATTGGACTATGAATGTATTATATTCTTGCCTTCTGTTTTGGCTGCATCTGTTGTATTTCTTGCCAGATTTATTATCCGGCCTGGAGTAAATCCATGGACTTCATCCCTGTGTGAATGCTTGGAATATGAATCGGCTGATTTGGAAGAATGTGTTAAAATGTTACATGACTTGTATTTGTCGAGAAGGGCAGCGTCCTTCAAAGCTGTTCGTGACAAATACAAGCAGAACAAGTTCAAATGTGTTGCAAACTTGCCTTCTCCTCCTGAGGTGCCAAACCATTACTTTGAAGAAAAGTGA 981 0.3894 METRASKKRPNTNQQPQQVIVPKRQRVVLKEFPSLDFNFDKPVYKRNNVKRDNQHIIEPYVSDIFDYLRTMENKRRPMVGYIENVQLDITSNMRGTLVDWLVEVADEYKLLPETLYLSVSYIDRFLSLNTLNRKKLQLLGVSSMLIASKYEEITPPKAVDFRQITDNTYDLKEVLTMEADILKSLNFEMGNPNVYTFLKRFVGIASENRKNSNLQFEYLCNYLAELSLLDYECIIFLPSVLAASVVFLARFIIRPGVNPWTSSLCECLEYESADLEECVKMLHDLYLSRRAASFKAVRDKYKQNKFKCVANLPSPPEVPNHYFEEK 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04894 326 Pfam Cyclin, C-terminal domain 192 314 IPR004367 -
Trre5g04894 326 Gene3D - 63 311 - -
Trre5g04894 326 PANTHER CYCLINS 46 309 IPR039361 -
Trre5g04894 326 SMART cyclin_7 196 284 IPR013763 -
Trre5g04894 326 SMART cyclin_7 99 183 IPR013763 -
Trre5g04894 326 Pfam Cyclin, N-terminal domain 63 189 IPR006671 -
Trre5g04894 326 ProSitePatterns Cyclins signature. 94 125 IPR006671 -
Trre5g04894 326 Gene3D - 77 190 - -
Trre5g04894 326 SUPERFAMILY Cyclin-like 192 316 IPR036915 -
Trre5g04894 326 SUPERFAMILY Cyclin-like 52 189 IPR036915 -
Trre5g04894 326 FunFam Cyclin superfamily protein, putative 189 261 - -
Trre5g04894 326 PIRSF Cyclin_A_B_D_E 1 324 IPR046965 GO:0016538|GO:0044772
Trre5g04894 326 SMART Cyclin_C_2 192 315 IPR004367 -
Trre5g04894 326 FunFam G2/mitotic-specific cyclin 77 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04894 Trre-Chr5 50736126 50738105 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04894 3 325 Core Cell Cycle Gene Families AT5G43080 53.509 6.76e-124 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04894 K06627 - gmx:100787417 391.734