Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04893 ATGGAGACTCGCGCCTCAAAGAAGAGAGCAAACGTCAATCAACAGCCACCACAACCACAAGTCATCGTTCTCAAACGACAGAGAGTTGTATTGGGTGAAATTCCTGATCTCAGTTTCCCCCAATTTCAACCCAAACACAAACTCCAAGTTCGTAAAAACCCTAACCTCAACAATTCAGAAAAGTCTCTACCTTCAATTGATTCCAATTTGGATAAGCCAGTTCCAAGAAACAACAATCCGATACGTCCCAATGAAGAAATTAACGAGCCTTATGTATCCGACATTTTCGATTATCTTCGCACAATAGAGATGCAGAAAAAGAGAAGGCCAATGGTTGGTTATATGGAGAAAGTTCAAACAGACATTACATCGAACATGAGGGGGACATTGGTTGATTGGTTAGTTGAGGTTGCCGACGAATACAAGCTTCTCCCCGAAACCCTTCATCTCTCCATTTCCTACATTGATAGATTCCTATCTCTTAACACTGTCCACAGATCCAAGCTTCAGTTGCTTGGTGTTTCCTCCATGCTCATCGCTTCAAAGTATGAAGAAATCACCCCACCAAAGGCCATAGATTTCTGCCAAATTACTGATAACACCTATGACCTGACAGAGGTTTTGAAGATGGAAGCCGACATACTCAAGTCTCTAAATTTTGAAATGGGCAGCCCTAATGTTAGCACATTTCTGAAGAGGTTTGTAGGTATTGCTTCTGAGAATCCAAAGACTTCTAATTTGCAGTTTGAATATCTGTGCAACTATCTTGCTGAGTTAAGCTTGTTGGACTATGAGTGTATAAGATTCTTGCCTTCTGTTGTGGCTGCATCTGCTATATTTCTTGCTAGGTTTATCATCTGGCCTGGAGTACATCCTTGGAGTTCATCCCTGTGTGAATGCTTGGGATATGAATCAACTGATTTGGAAGAATGTGTTACAATGTTACATGACTTGTATTTGTCAAGAAGGGCAGCATCCTTCAAAGCTGTTCGGGAGAAATACAAGCAGCAGAAGTTCCAATATGTGGCAAACCTACCTTCTCCGCCAGAGGTGCCAAGTAATTACTTTGAAGAAGAGTAA 1080 0.4148 METRASKKRANVNQQPPQPQVIVLKRQRVVLGEIPDLSFPQFQPKHKLQVRKNPNLNNSEKSLPSIDSNLDKPVPRNNNPIRPNEEINEPYVSDIFDYLRTIEMQKKRRPMVGYMEKVQTDITSNMRGTLVDWLVEVADEYKLLPETLHLSISYIDRFLSLNTVHRSKLQLLGVSSMLIASKYEEITPPKAIDFCQITDNTYDLTEVLKMEADILKSLNFEMGSPNVSTFLKRFVGIASENPKTSNLQFEYLCNYLAELSLLDYECIRFLPSVVAASAIFLARFIIWPGVHPWSSSLCECLGYESTDLEECVTMLHDLYLSRRAASFKAVREKYKQQKFQYVANLPSPPEVPSNYFEEE 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04893 359 SUPERFAMILY Cyclin-like 87 222 IPR036915 -
Trre5g04893 359 Gene3D - 108 223 - -
Trre5g04893 359 MobiDBLite consensus disorder prediction 1 20 - -
Trre5g04893 359 SMART Cyclin_C_2 225 348 IPR004367 -
Trre5g04893 359 MobiDBLite consensus disorder prediction 45 86 - -
Trre5g04893 359 SUPERFAMILY Cyclin-like 225 349 IPR036915 -
Trre5g04893 359 PIRSF Cyclin_A_B_D_E 2 356 IPR046965 GO:0016538|GO:0044772
Trre5g04893 359 FunFam G2/mitotic-specific cyclin 110 221 - -
Trre5g04893 359 SMART cyclin_7 229 317 IPR013763 -
Trre5g04893 359 SMART cyclin_7 132 216 IPR013763 -
Trre5g04893 359 Pfam Cyclin, N-terminal domain 94 222 IPR006671 -
Trre5g04893 359 ProSitePatterns Cyclins signature. 127 158 IPR006671 -
Trre5g04893 359 PANTHER CYCLINS 62 336 IPR039361 -
Trre5g04893 359 Gene3D - 94 344 - -
Trre5g04893 359 MobiDBLite consensus disorder prediction 48 75 - -
Trre5g04893 359 FunFam Cyclin superfamily protein, putative 222 294 - -
Trre5g04893 359 Pfam Cyclin, C-terminal domain 225 347 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04893 Trre-Chr5 50732160 50733914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04893 3 358 Core Cell Cycle Gene Families AT5G43080 52.528 1.37e-127 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04893 K06627 - gmx:547779 429.098