Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04887 ATGGATGACAAGATAGATACTGCAGAAAAGAAGGTGTTGGTTGATATTGTAAAGTTGTCACAAAAGAAAGGCATGAAGGGTCAAATGGGAGACTGGAAAGAATTCTTGAACAGTCATGATAAAAAATTCGGGGCAGGTATGAGCGATCCATCGAAGAGGTCCCATGAGGTTTTGGCTGCATTTCTAAAGACATTCACAAAGGATGATGATTTGAAGTTTTTTGGTAATATAATGCGGCATCATTCAAATCAATACACGTTAGAGCGGCTGAAAGATAGATCTCATGATTCCCCCGAGCAGAGTCTAGTCCAAGTAACTCTCCAGCATCCTAGGTATCCACGGGATTATTCACTGCCATCTATTGATGAGGGATGGTTAGTGATAAATCTTAAAAAGAAAGGCAAGGGGATAAGATCTACTGCAATGGTTGCTGTTGATTGTGAAATGGTTCGCTGTGAAGATGGGACTGAAGCTTTAGTCAAAGTCTGTGTTGTAGATCAAAATCTAGAGGTCAAGTTGCACAAACTTGTTAAACCGGAGAAAGCAATCGTAGACTATAAAACAGACATTACTGGTGTCTCTTCTGAAGATTTAAAGACTGTGACTTGTTCCTTAGCTGATATACAGAAATCAATGAAGAAGTTGCTATCCAATGGAACCATATTAGTGGGACACAGTTTACATAATGATCTACGTGTGCTGAAGTTAGATTATGTTAGAGTGATCGACACTGCATATATCTTCCAACCCGTGGATGGATCAATTCACATGAGACCTTCTTTGAATAGTTTATGTCAGTCTGTGTTGGGCTATGAAGTTCGGAAAAAGGGTGCTTCACATGATTGTCTAGATGATGCATGTGCAACAATGAAACTAGTTCTTGCAAAGATCAAACATGGTGTTGATAAGCCATTTCCATTGGCAGTGGTTCAAGAGCCTGTTTCAGAAAGTGAGATGGCGAAGCTGTTTATTCACAGAATTCCAACCACTATGAACATTGAATCACTACATGAAATTGTTCCTGGAGAATTCACAATAGAGCGAAAGCCTTCCAGGAATGATCAAGGAGATAAATATTCTGCCTTTGTGATCTTTAAGAACCTACGAGAGGCACATGATGCATATGAAAGTCTCCAAGGCAGCCAATCAAAGGATTCAAATGGGCGTCTACAGAAAAATGTCACTTGTCGGCTGAGTACAGGCATGAGTGTCAGTGTATTTGTTCGGGAAATGGGAATTGATGATCACCACAAAAAAATGCCATCTAAGAGAGATTTACCAGTAAACGAGACAGATGATGTTCCCAAGAATAAGAAAGTAAAAATGGATCCAGAAGTTGAGAAGGGTGTCTACTTGAAAGAGATAGAAGCATTGAACCAACGATTGAAAGAAAGTGTGTCGGAAATCGATTCATTGAAGGAACAGTTGAGAAAAGTGGATCCTGAAATTGTAAAGGATGCCCACTTGAAAGAGATTGAAGCATTGAATCAACGATTGAAAGAGAGTGAATTGGAGATTGAATCATTGAGGGAACAGACAAGAAAAAAGGACTTTGAAATCAACGCTCTGCATAAAATGGTATCAACCTTGCAAAAAAGGATAAAACCTAACAAATAG 1617 0.3921 MDDKIDTAEKKVLVDIVKLSQKKGMKGQMGDWKEFLNSHDKKFGAGMSDPSKRSHEVLAAFLKTFTKDDDLKFFGNIMRHHSNQYTLERLKDRSHDSPEQSLVQVTLQHPRYPRDYSLPSIDEGWLVINLKKKGKGIRSTAMVAVDCEMVRCEDGTEALVKVCVVDQNLEVKLHKLVKPEKAIVDYKTDITGVSSEDLKTVTCSLADIQKSMKKLLSNGTILVGHSLHNDLRVLKLDYVRVIDTAYIFQPVDGSIHMRPSLNSLCQSVLGYEVRKKGASHDCLDDACATMKLVLAKIKHGVDKPFPLAVVQEPVSESEMAKLFIHRIPTTMNIESLHEIVPGEFTIERKPSRNDQGDKYSAFVIFKNLREAHDAYESLQGSQSKDSNGRLQKNVTCRLSTGMSVSVFVREMGIDDHHKKMPSKRDLPVNETDDVPKNKKVKMDPEVEKGVYLKEIEALNQRLKESVSEIDSLKEQLRKVDPEIVKDAHLKEIEALNQRLKESELEIESLREQTRKKDFEINALHKMVSTLQKRIKPNK 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04887 538 Coils Coil 452 475 - -
Trre5g04887 538 SUPERFAMILY Ribonuclease H-like 142 298 IPR012337 -
Trre5g04887 538 Pfam Exonuclease 143 292 IPR013520 -
Trre5g04887 538 CDD REX1_like 143 294 IPR034922 -
Trre5g04887 538 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 11 310 IPR047021 GO:0004527
Trre5g04887 538 SUPERFAMILY RNA-binding domain, RBD 317 385 IPR035979 GO:0003676
Trre5g04887 538 Gene3D - 136 305 IPR036397 GO:0003676
Trre5g04887 538 Coils Coil 485 512 - -
Trre5g04887 538 Gene3D - 315 395 IPR012677 -
Trre5g04887 538 SMART exoiiiendus 141 302 IPR013520 -
Trre5g04887 538 FunFam Small RNA degrading nuclease 3 137 311 - -
Trre5g04887 538 MobiDBLite consensus disorder prediction 417 436 - -
Trre5g04887 538 CDD RRM_SF 322 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04887 Trre-Chr5 50669684 50676192 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04887 138 309 C2H2 Transcription Factor Family AT3G27970 32.461 2.23e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04887 K14570 - gmx:100785565 687.567