Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04882 ATGCATTTTATCCTACTCTCTTTGCTTTTGTTTCTAAAACTTTCATCAACTTCAGCATTTGATACTATGATTCAAGGTTCATCCCTTTCAGTGGATGAACCGAAAGATATCATAGTATCAGAAAACGGCATGTTTTGTGCCGGATTCTATGCTGTTGGTGAAAATGCATATTCCTTTGCCATTTGGTTTTCCGAACCAAATCACCAAACCAAAAACCTTACCATAGTATGGATGGCAAACCGCGAACAACCAGTTAACGGAAAAGGATCAAAACTTCACCTTCTCCACAACGGTAACCTTATCTTAAGAGATACCGACAAGTCTCATGTTTGGTCCACAAACACTGTCGCAAACTCATCAGTTCATCTCATTCTTTTAAACACCGGGAACCTTGTTTTACAAGGTAACGGTGTTACCCTGTGGCAAAGCTTTGATTACCCTACGGATACACTTCTACCGCAACAAGTTTTCAACAGACATTCAAAACTAGTTTGTTCGAGAAGCGAAACAAACAAGTCATCTGGTTTTTACACGTTGTATTTTGACAACGATAATATTCTTCGTATGCTATACGACGGTCCTGAAGTATCAAGCATTTTTTGGCCGGATCCTTGGCTAACTGATTGGGATGCTAAAAGGGCTGGTTATAATAACAGCAAAGTCGCGGTTTTGAACACTCTTGGTAACTTTAGTTCATCAGATGATTTCAATTTCATGACATCTGATTATGGAGATCCAATGATGCAGAGAAGAATAAGACTTGATCCCGATGGAAACATTCGAACTTATAGTCGAAAACAAAGTGGCCAAAATTGGTACATTTCATGGCAAGCTAAATCAAGACCTTGTAGAATTCAAGGTGTTTGTGGTGTGAATAGTTTGTGTTCTTATTATAGTAACAGTGTGAAATGTGCATGTCTTCCAGGCTACAAAATGAAGAATCAACAAGATTGGGCTTATGGATGTGAACCAGAATTCTCTCTGTCATGCAACAAAACCGATTTGCGGTTTCTAATTATAACCAATGTGGAGTTATATGGTTATGATTATGGAATCATGACAAATTACACACTTGAACAGTGTAAAGATTTATGTTTGCAATTATGTAACTGCAAAGGCATTCAATTTACCTATGTCAAAACCGGAACTGGTATACCCGGTACTTATTCCTGTTATCCGAAGATGCAGCTGCGAAATGCATATCGAATACCATATTTTAATGCTGATTTGCACTTGAAATTGCCGGTAAACAGTTCGTACACTTACACGGAGTCGATGAATGATAAGTACAAACTTTCTTGTTCATCGAATCCGAAAACAGTAACTCTTGCAACATCATATAACAAATTTCACGAAGGAAGGTATGTAAGATTTTTGCTCTGGTTTGTATGTGGAATGGGAGGACTAGAAATCTTGTGCATATTTGTAATATGGTTTTTCTTTGTAAGGAAAAAACAAAAAACTTCTAGAACGGATACAAGAGTCTATGATATGGTTGGTTTTAGAAAATTCAGTTATTCCGAATTGAAAAGAGCAACAAAAAGTTTTAGGCAAGAGATTGGAAGAGGCGCGGGAGGTATTGTATACAAAGGTGTATTGTTAGATCAACGAATTATAGCGGTGAAGAGAGTCAAGGAAGCTAATCAAGGCGAAGATGAGTTTCTCGCCGAAGTTAGTAGCATTGGAAGACTTAACCACATGAACTTGATTGAGTTATATGGTTATTGTGTCGAGGGAAAACACCGAATGCTTGTGTATGAGTACTTGGAAAATGGTTCTTTAGCGGAACATATAAAGTCTAGTAGATTGGATTGGGGAAAAAGGTTTGAAATAGCTTTAGGTACCGCGAAAGGTTTGGCTTATATTCACGAAGAGTGTTTGGAGTGGATTTTGCATTGCGATGTGAAGCCGCATAACATACTATTGGATTCCAACTATCAACCAAAGGTGGCGGATTTTGGTTTGTCGAAATTGAGAAATAGGAATGATCCTAAATTCTCTAGTTTTTCGAAGATACGAGGAACAAGAGGTTACATGGCACCTGAGTGGATTTTAAATCATTCTATAACATCTAAAGTTGATGTTTATAGCTACGGAATAGTTGTGTTGGAAATGATAACCGGAAAGAGTGCAACAAAAGACGTTGATGTCGGAAATGGAGAAGAGAGGCTAGGTTTGGTTATATGGTTGAGAGAAAAAAGAAATGAAAGTATTTCATGGGTTAAGGAAATTATGGATCCCAACATAGAAGAAGGTTTTGATGAAAATGAAGTTGAAGCTTTGGCTGAAGTGGCTTTACAATGTGTTGAGGAAGAGAAAGACAAGAGACCTACCATGAGCCATGTGGTAGAAGTGCTTCAGAAAATTAGCCGGAAAAATGATAATCAGGAATCAACAAGTAGCTAG 2406 0.3774 MHFILLSLLLFLKLSSTSAFDTMIQGSSLSVDEPKDIIVSENGMFCAGFYAVGENAYSFAIWFSEPNHQTKNLTIVWMANREQPVNGKGSKLHLLHNGNLILRDTDKSHVWSTNTVANSSVHLILLNTGNLVLQGNGVTLWQSFDYPTDTLLPQQVFNRHSKLVCSRSETNKSSGFYTLYFDNDNILRMLYDGPEVSSIFWPDPWLTDWDAKRAGYNNSKVAVLNTLGNFSSSDDFNFMTSDYGDPMMQRRIRLDPDGNIRTYSRKQSGQNWYISWQAKSRPCRIQGVCGVNSLCSYYSNSVKCACLPGYKMKNQQDWAYGCEPEFSLSCNKTDLRFLIITNVELYGYDYGIMTNYTLEQCKDLCLQLCNCKGIQFTYVKTGTGIPGTYSCYPKMQLRNAYRIPYFNADLHLKLPVNSSYTYTESMNDKYKLSCSSNPKTVTLATSYNKFHEGRYVRFLLWFVCGMGGLEILCIFVIWFFFVRKKQKTSRTDTRVYDMVGFRKFSYSELKRATKSFRQEIGRGAGGIVYKGVLLDQRIIAVKRVKEANQGEDEFLAEVSSIGRLNHMNLIELYGYCVEGKHRMLVYEYLENGSLAEHIKSSRLDWGKRFEIALGTAKGLAYIHEECLEWILHCDVKPHNILLDSNYQPKVADFGLSKLRNRNDPKFSSFSKIRGTRGYMAPEWILNHSITSKVDVYSYGIVVLEMITGKSATKDVDVGNGEERLGLVIWLREKRNESISWVKEIMDPNIEEGFDENEVEALAEVALQCVEEEKDKRPTMSHVVEVLQKISRKNDNQESTSS 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04882 801 CDD STKc_IRAK 520 789 - -
Trre5g04882 801 PIRSF SRK 1 801 IPR024171 GO:0004674
Trre5g04882 801 Pfam Protein kinase domain 517 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04882 801 ProSiteProfiles Protein kinase domain profile. 514 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04882 801 SMART serkin_6 514 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04882 801 SUPERFAMILY Protein kinase-like (PK-like) 494 787 IPR011009 -
Trre5g04882 801 SMART blect_4 26 147 IPR001480 -
Trre5g04882 801 CDD PAN_AP_plant 326 415 - -
Trre5g04882 801 CDD EGF 282 310 - -
Trre5g04882 801 FunFam S-receptor-like serine/threonine-protein kinase 483 588 - -
Trre5g04882 801 PANTHER OS07G0415500 PROTEIN 6 789 - -
Trre5g04882 801 Gene3D Phosphorylase Kinase; domain 1 479 588 - -
Trre5g04882 801 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 201 IPR036426 -
Trre5g04882 801 FunFam Putative receptor protein kinase ZmPK1 17 146 - -
Trre5g04882 801 Gene3D - 146 274 IPR036426 -
Trre5g04882 801 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 589 796 - -
Trre5g04882 801 ProSiteProfiles Bulb-type lectin domain profile. 20 146 IPR001480 -
Trre5g04882 801 Pfam D-mannose binding lectin 74 162 IPR001480 -
Trre5g04882 801 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Trre5g04882 801 ProSitePatterns Protein kinases ATP-binding region signature. 520 542 IPR017441 GO:0005524
Trre5g04882 801 CDD B_lectin 28 147 IPR001480 -
Trre5g04882 801 Gene3D - 16 145 IPR036426 -
Trre5g04882 801 Gene3D Transferase(Phosphotransferase) domain 1 589 801 - -
Trre5g04882 801 ProSiteProfiles PAN/Apple domain profile. 330 410 IPR003609 -
Trre5g04882 801 Pfam S-locus glycoprotein domain 229 313 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04882 Trre-Chr5 50620714 50623119 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04882 436 789 Receptor kinase-like Gene Family AT5G45780 34.973 6.69e-67 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trre5g04882 Pkinase 1.4e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04882 - - gmx:100792388 1122.07