Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04879 ATGCAAATTCAAGTCTTCCTCCTCTTTCTCTTATTCATCACTAAAACCATTTCATTAACATCAACAAGAGACACACTCCCACAAGGCTCATCTCTTTCGGTAGAAAAACCAAATGACATCCTTATTTCATCCAACGGCGTTTACTCAGCCGGTTTCTTCCAGGTCGGAGACAACGCCTTTTGTTTCTCCGTCTACTTCACAAAATCCAAACAACCCGCCGTTGTTTGGATGGCAAATCGAGACCAACCCGTTAATGGAAAAAACTCAAAACTCTCACTTTCTAATAACGGTAATCTCGTTTTAACCGATGCAAAAACAAAAGGAACACCAATTTGGTCCATTTCAAATTTGTCTCCTTTTCCATTACAGCTAAAGCTTCAAAACAATGGTAACCTTGTACTTGAAACTTTGCAAAAAACCCAAAAAAGTACTAACGTTACTATCATTTGGCAAAGCTTTGATTCTCCAACAGATACTCTTCTTGAAGGCCAAGAACTTACAGAACACTCAAGCTTAATTTCATCCAAAAGCAAAACAAATTATTCCTCAGGTTTCTACAAACTTTATTTTGACAACGATAACGCTCTTCGTCTTTTATTCAAAGGTCCATTGTTAGCCAGTGTTTATTGGCCAACACCTTGGATATTACCAATCGATTTAGGAAGATCAACATACAATGCTACCAAAATCGCGCTACTCGATTCTTTTGGTCATTTCACGTCCTCTGATGCGTTTCAATTTCGCACCACCGATTATCCTAATAAAGTTCATAGGTTACTCAAAATGGATCATGATGGTAACTTACGTGTTTATAGCTTCAATGAGAAAATGAAGACATGGGAAGTAACATGGCAAGTTACTCTTCAACCATGTGAGGTTCATGGTATTTGTGGAGAAAATAGCATGTGTAGTTATGATCATGTTATTGGAAGAACATGTTTTTGTTTGAAAGGTTACAAGGTGAAGAATCCTCATGATTGGTCACAAGGGTGTGAGCCTGAGTTTAAACCTACTGATCTTTCGTGTAATCGCGGTGTGTCTTACGGTTTTCTTCGTCTTCAAAGCTCGGAGTTGTTTGGCTATGATTTGTATAAAAAAGCAGTTACAAGCTTGAAGCAATGTCAAGATATATGTTTAGGTCTTTGTGAGAAATGCAAAGGTTTTCAATTCAGATTCAATCAACAAGCTACTTATGATTGTTATCCTAAAACATTGTTGGTCAATGGAAGGGATTCTCGCAATCTTGATGGTGAAGTTTACTTGAAATTGCCCAAAAATATTTTGTCATCTTCCTCCATGCCACATAAACATTCACCTTTGAACTGTTCCATTGCTTTGTCTCAACCATTGAATAGATTCTATGAAAAACCAAGTAAAAATTCAACTTTGAGTTTCTTAGTTTGGTTTGCATTAGGGTTTGGTGTATTTGAGATAATCATGATTATCATTGTGTGGTTCTTTTTGTTTAGAACCAATAAGAACAATGATAATGTTGATCAAGTACAAAGACACCTTCTTTCAGCAACCGGCTTTCAAAAAATTTCATATTCAGAACTAAAAACCGCCACAAAAGGGTTTACCAAAGAGATCGGTCGAGGTGGAGGAGGAACCGTTTACAAAGGTATACTTGATGATGATCGTATTGCGGCTGTTAAATGCTTACACGAAGCGCATCAAGGCGAAGCCGAATTTCTAACCGAAATAAGCACAATTGGTATGTTGAACCATATGAATTTGATTGATATGTGGGGATATTGTGTTGAAGGGAAACATAGGATTTTGGTTTATGAGTATATGGAACATGGTTCTTTAGCCGAAAATCTACGTTCTAATTCACTTGATTGGAACAAGAGATTTAATATTGCTGTGGGAACAGCTAAAGGTTTGGCTTATTTACATGAAGAGTGTTTGGAATGGGTTTTACATTGTGATGTGAAGCCTCATAATATCTTACTTGACACAAAATTTCAACCAAAAGTAGCTGATTTTGGATTATCAAAACTTTTAAATAGAGATGAACGTGATAGTTCTGTCTTTTCCAGAATTAGAGGAACAAGAGGTTATATGGCTCCTGAATGGGTTTATAATCTTAAAATTACTTCTAAAGTTGATGTTTATAGTTATGGAATTGTTTTGCTTGAAATGGTGAGTGGTAAAAGTCCAATGGAAATTCATAGTCTTAATAATAGTGGAGGTGGAGGTATAGAGCATCATAGAATGGTGAGTTGGGTTATGGAAAAGGTGAAAAATGCTCCTACTACTATGTTTTGGATTGAGGAGATTGTTGATGGTAATTTGGAAGGAAAATATGATGTTAATCAAGTTGAGAATTTGGTTAAAATTGCTTTGAAGTGTGTCAAAGATGATATGAATGAAAGACCTTCCATGAGTCAAGTAGTTGAAATGCTTCTTGAGTCCAATGAAAAAAGGGGCACCCCTCATTAG 2445 0.3632 MQIQVFLLFLLFITKTISLTSTRDTLPQGSSLSVEKPNDILISSNGVYSAGFFQVGDNAFCFSVYFTKSKQPAVVWMANRDQPVNGKNSKLSLSNNGNLVLTDAKTKGTPIWSISNLSPFPLQLKLQNNGNLVLETLQKTQKSTNVTIIWQSFDSPTDTLLEGQELTEHSSLISSKSKTNYSSGFYKLYFDNDNALRLLFKGPLLASVYWPTPWILPIDLGRSTYNATKIALLDSFGHFTSSDAFQFRTTDYPNKVHRLLKMDHDGNLRVYSFNEKMKTWEVTWQVTLQPCEVHGICGENSMCSYDHVIGRTCFCLKGYKVKNPHDWSQGCEPEFKPTDLSCNRGVSYGFLRLQSSELFGYDLYKKAVTSLKQCQDICLGLCEKCKGFQFRFNQQATYDCYPKTLLVNGRDSRNLDGEVYLKLPKNILSSSSMPHKHSPLNCSIALSQPLNRFYEKPSKNSTLSFLVWFALGFGVFEIIMIIIVWFFLFRTNKNNDNVDQVQRHLLSATGFQKISYSELKTATKGFTKEIGRGGGGTVYKGILDDDRIAAVKCLHEAHQGEAEFLTEISTIGMLNHMNLIDMWGYCVEGKHRILVYEYMEHGSLAENLRSNSLDWNKRFNIAVGTAKGLAYLHEECLEWVLHCDVKPHNILLDTKFQPKVADFGLSKLLNRDERDSSVFSRIRGTRGYMAPEWVYNLKITSKVDVYSYGIVLLEMVSGKSPMEIHSLNNSGGGGIEHHRMVSWVMEKVKNAPTTMFWIEEIVDGNLEGKYDVNQVENLVKIALKCVKDDMNERPSMSQVVEMLLESNEKRGTPH 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04879 814 Gene3D Transferase(Phosphotransferase) domain 1 599 812 - -
Trre5g04879 814 ProSiteProfiles Protein kinase domain profile. 524 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04879 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672|GO:0006468
Trre5g04879 814 Gene3D Phosphorylase Kinase; domain 1 489 598 - -
Trre5g04879 814 ProSiteProfiles PAN/Apple domain profile. 342 424 IPR003609 -
Trre5g04879 814 PANTHER OS07G0415500 PROTEIN 6 805 - -
Trre5g04879 814 ProSiteProfiles Bulb-type lectin domain profile. 17 147 IPR001480 -
Trre5g04879 814 SMART serkin_6 524 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04879 814 CDD B_lectin 41 156 IPR001480 -
Trre5g04879 814 Pfam D-mannose binding lectin 74 168 IPR001480 -
Trre5g04879 814 ProSitePatterns Protein kinases ATP-binding region signature. 530 552 IPR017441 GO:0005524
Trre5g04879 814 SUPERFAMILY Protein kinase-like (PK-like) 504 803 IPR011009 -
Trre5g04879 814 CDD STKc_IRAK 530 805 - -
Trre5g04879 814 SMART blect_4 32 156 IPR001480 -
Trre5g04879 814 FunFam S-receptor-like serine/threonine-protein kinase 492 598 - -
Trre5g04879 814 SUPERFAMILY alpha-D-mannose-specific plant lectins 60 213 IPR036426 -
Trre5g04879 814 FunFam Serine/threonine-protein kinase 599 811 - -
Trre5g04879 814 Pfam Protein kinase domain 528 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04879 814 PIRSF SRK 1 814 IPR024171 GO:0004674
Trre5g04879 814 Gene3D - 18 154 IPR036426 -
Trre5g04879 814 CDD PAN_AP_plant 338 424 - -
Trre5g04879 814 Pfam S-locus glycoprotein domain 244 322 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04879 Trre-Chr5 50594241 50596685 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04879 464 803 Receptor kinase-like Gene Family AT5G45780 38.571 2.09e-69 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trre5g04879 Pkinase 7.2e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04879 - - gmx:100816469 1142.49