Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04863 ATGTTCCTTTTGGATACCTTGTACTGTTCAGAACAACATTGGGAGGAAGAACAAGAACAAGATCAAGATGAGTACGATGATGTTTTCTTAAACAACACCACAACAATAAATTACTCAACTCCATCTATGTTCTTAGAACAAGACATGTTTTGGGACAATGAAGAACTTAAATCACTTCTTTCAAAAGAACAACAAAACCCACTTTACATTTTTCTTCAAACAAACCCTGTTTTAGAAACTGTTCGTAGAGAATCTATTGAATGGATTCTAAAAGTCAATGCTCATTACTCATTTTCACCTCTCACAGCTGTTCTTGCTGTTAACTACTTTGATAGATTTCTCTTCAGTTTCCGTTTTCAGAATGAGAAACCATGGATGACTCAGCTTGCTGCTGTTGCTTGTCTCTCTCTTGCTGCTAAAATGGAAGAAACCCATGTTCCTCTTTTACTAGATCTTCAAGTTGAAGAAAGTAGATACTTATTTGAAGCTAAAACGATTAAAAAGATGGAAATTTTGGTACTTTCAACACTTGGGTGGAAGATGAATCCAGCAACACCACTTTCATTTATTGATTATATTATAAGAAGACTTGGATTGAAAGATCGTCTTTGTTGGGAATTTCTTAAGAGATGTGAAGGTGTTCTTCTTTCTATCATTAGATCAGATTCTAAGTTTATGAGTTATCTACCTTCTGTTCTGGCAACTGCTACAATGGTTCATGTTTTCAATAGTGTGGAGCCTAGTTTAGGTGATGAATACCAAAACCAGCTTCTTGGTATTCTTGGAATCAATAAAGACAAGGTGGATGAATGTTGCAAGTTGATTTTGAAACTATGGTCAGGGAATGAGGAGGGGAATGAATGCAACAAACGTAAGTTTGGGTCAATTATTCCAAGTAGTCCAAATGGAGTAATGGATGTGTCTTTTAGTTGTGAAAATTCCAATGATTCATGTGCTATAGCAACAACAACAGCATCAATATCATCTTCACCAGAGCCTTTGTCTAAGAAGATTAGAACTCAAGAACAGCTTCTATTAAACTCATCAAAATCTGATTTTCTAAGCATTCCTCATTAG 1077 0.3528 MFLLDTLYCSEQHWEEEQEQDQDEYDDVFLNNTTTINYSTPSMFLEQDMFWDNEELKSLLSKEQQNPLYIFLQTNPVLETVRRESIEWILKVNAHYSFSPLTAVLAVNYFDRFLFSFRFQNEKPWMTQLAAVACLSLAAKMEETHVPLLLDLQVEESRYLFEAKTIKKMEILVLSTLGWKMNPATPLSFIDYIIRRLGLKDRLCWEFLKRCEGVLLSIIRSDSKFMSYLPSVLATATMVHVFNSVEPSLGDEYQNQLLGILGINKDKVDECCKLILKLWSGNEEGNECNKRKFGSIIPSSPNGVMDVSFSCENSNDSCAIATTTASISSSPEPLSKKIRTQEQLLLNSSKSDFLSIPH 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04863 358 ProSitePatterns Cyclins signature. 82 113 IPR006671 -
Trre5g04863 358 SUPERFAMILY Cyclin-like 166 282 IPR036915 -
Trre5g04863 358 CDD CYCLIN_AtCycD-like_rpt1 81 179 - -
Trre5g04863 358 SUPERFAMILY Cyclin-like 49 182 IPR036915 -
Trre5g04863 358 Pfam Cyclin, N-terminal domain 62 182 IPR006671 -
Trre5g04863 358 SMART Cyclin_C_2 184 313 IPR004367 -
Trre5g04863 358 PANTHER CYCLINS 54 277 IPR039361 -
Trre5g04863 358 FunFam D3-type cyclin 75 182 - -
Trre5g04863 358 CDD CYCLIN_AtCycD-like_rpt2 185 275 - -
Trre5g04863 358 SMART cyclin_7 87 175 IPR013763 -
Trre5g04863 358 Gene3D - 59 273 - -
Trre5g04863 358 FunFam CYCLIN D32 183 273 - -
Trre5g04863 358 Pfam Cyclin, C-terminal domain 185 293 IPR004367 -
Trre5g04863 358 Gene3D - 66 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04863 Trre-Chr5 50480531 50482050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04863 2 278 Core Cell Cycle Gene Families AT4G34160 52.347 4.69e-97 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04863 K14505 - aprc:113874132 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04863 5 50480531 50482050 Trre15g03794 15 47273741 47275262 ECH
Trre5g04863 5 50480531 50482050 Trre1g05848 1 63153967 63155805 ECH
Trre5g04863 5 50480531 50482050 Trre5g04863 5 50480531 50482050 ECH