Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04856 ATGGCGCTAAACAAAAACCACTCAAACATCTTCATCATCAACCTCTCACTTTTACTACTACTACTTTCAACTCTTACTACATTCTCCAACTCCTCCAAGCTCAAAAACATCACACTCTCAGATCCTACATCACTATTATCATTCAAATCTAAAGCTGACATTAACAACCATCTCAACTTCACCACCAAAACTACCTTCTGCAACTGGCAAGGTGTTCAATGCAACAACCAACACAAAATCATTCGTCTCGTTCTCCGTAGTTTAGATCTCGGCGGCGTTTTCGCTTCACACACATTATCAAATCTCGATCAACTCCGTGTTCTCAGTCTCCAGAACAACTCTCTCACCGGAACTATACCTAATCTCTCTGGTCTCTTCAATCTCAAGACGCTGTTTCTTGATAATAACTACTTCACTGGTTCTATTCCTCTTTCTATTTTCTCTCTTCATAGACTCAAAACCTTGGATTTCTCTCATAACAATCTCTCTGGAAATATTCCTATAGATTTTGTTAACCTTGATCGTCTTTATTATCTTCGTTTAAGCTTTAATGCTTTTAACGGTACTGTTCCTCCTTTTAATCAGTCTTCTCTTCGAACTTTTGATGTTTCCGGTAACAATCTCTCCGGCGCTGTTCCGTTAACCACCACGCTTTCTCGGTTTCCGCCGGCGTCGTTCGCTTTAAATCCTAACCTCTGCGGGGAGATTATTCGGAGAGAATGTCGTCCGTGTGTGCCGTTTTTCGCTCCGACTTCGCCTCCGTCGGTTGGACTTGGACAGAGTGCGAAGGTTCATGGATTAATCCGGCAACCGTATCAGAAGAAACACGATCGGAGAAAGGTGATTATAGGATTCTCTACTGGAATTTTCGTTCTGTTAATCTCGTTAGCGTGTTTTGCTGTGGTGATTAAGAAACAGAGAAAGAAGAAAGGTAAAGGCTCTTCCGGTTCAAGTGTGATGGCTTCAGATGCGGCGGCGACGGCGGAAGCAGCGGTTGTGATGCAAATGGAGCAAGAGAGAGAGTTAGAAGAAAAGGTGAAAAGAGCACAAGTTGCAAAGAGTGGGAGTTTAATATTCTGTGCGGGTGAATCGCAGGTGTATACGCTGGACCAGTTGATGAAAGGATCTGCGGAGCTTTTAGGTAGAGGATGTTTAGGTACAACTTATAAAGCAGTGCTTGATAACCGTTTGATTGTAACAGTGAAGCGTCTTGATTGTGGGAAAATGGGTGTGCACGTTAATAAGGATGTATTTGAGCGTCACATGGAATCAGTTGGTGGTCTTCGTCATCCAAATTTAGTTCCTCTAAGAGCTTATTTTCAGGCTAATCAAGAGAGATTAATTATCTATGATTATCAACCTAATGGCAGTTTATTCTCCCTCATACATGGTTCCAAATCAAGCAGGGCAAGGCCATTACACTGGACATCATGCTTAAAAATAGCAGAGGATGTAGCACAAGGGCTTTCCTACATCCACCAGGCATGGAGACTGGTCCATGGCAATCTCAAGTCCACCAATGTTCTCCTAGGACCCGATTTTGAGGCTTGCATCACAGACTACTGCCTGTCTGTGTTAACCAACCCATCTACTTTTGATGAGGTCGGTGATTCTGCACCCTATAGAGCTCCAGAAACTCGCAATCCAAATCACCAGCCAACCACCAAATCTGACGTTTATGCTTATGGTATCTTGTTGCTAGAGCTTCTAACTGGGAAGTATGCTTCTGAGCTTCCATTCATGGTTCCTGGGGATATGTCAAGATGGGTGAGATCTATCAGGGATGACAATGGGAGCGAAGATAATAGAATGGATATGCTTCTTCAGGTGGCTACAACTTGTAGCTTGATTTCTCCAGAGCAGAGGCCCACAATGTGGCAGGTCTTGAAGATGTTACAGGAAATCAAAGAGATTGTACTATTGGAGGATAGTGAATTGGACCTAAGCAGTAATAATGTCATTGCCATGTCTTAG 1974 0.4311 MALNKNHSNIFIINLSLLLLLLSTLTTFSNSSKLKNITLSDPTSLLSFKSKADINNHLNFTTKTTFCNWQGVQCNNQHKIIRLVLRSLDLGGVFASHTLSNLDQLRVLSLQNNSLTGTIPNLSGLFNLKTLFLDNNYFTGSIPLSIFSLHRLKTLDFSHNNLSGNIPIDFVNLDRLYYLRLSFNAFNGTVPPFNQSSLRTFDVSGNNLSGAVPLTTTLSRFPPASFALNPNLCGEIIRRECRPCVPFFAPTSPPSVGLGQSAKVHGLIRQPYQKKHDRRKVIIGFSTGIFVLLISLACFAVVIKKQRKKKGKGSSGSSVMASDAAATAEAAVVMQMEQERELEEKVKRAQVAKSGSLIFCAGESQVYTLDQLMKGSAELLGRGCLGTTYKAVLDNRLIVTVKRLDCGKMGVHVNKDVFERHMESVGGLRHPNLVPLRAYFQANQERLIIYDYQPNGSLFSLIHGSKSSRARPLHWTSCLKIAEDVAQGLSYIHQAWRLVHGNLKSTNVLLGPDFEACITDYCLSVLTNPSTFDEVGDSAPYRAPETRNPNHQPTTKSDVYAYGILLLELLTGKYASELPFMVPGDMSRWVRSIRDDNGSEDNRMDMLLQVATTCSLISPEQRPTMWQVLKMLQEIKEIVLLEDSELDLSSNNVIAMS 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04856 657 SUPERFAMILY L domain-like 42 216 - -
Trre5g04856 657 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 18 636 IPR046959 -
Trre5g04856 657 Gene3D Ribonuclease Inhibitor 194 242 IPR032675 -
Trre5g04856 657 SUPERFAMILY Protein kinase-like (PK-like) 378 633 IPR011009 -
Trre5g04856 657 Gene3D Transferase(Phosphotransferase) domain 1 454 649 - -
Trre5g04856 657 ProSiteProfiles Protein kinase domain profile. 374 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04856 657 Gene3D Ribonuclease Inhibitor 38 193 IPR032675 -
Trre5g04856 657 Pfam Leucine rich repeat 127 185 IPR001611 GO:0005515
Trre5g04856 657 Gene3D Phosphorylase Kinase; domain 1 340 452 - -
Trre5g04856 657 Pfam Protein kinase domain 378 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04856 657 FunFam Nuclear pore complex protein NUP107 38 192 - -
Trre5g04856 657 ProSiteProfiles Leucine-rich repeat profile. 104 126 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04856 Trre-Chr5 50412109 50416010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04856 41 652 Receptor kinase-like Gene Family AT5G43020 59.177 0.0 704
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre5g04856 Pkinase 2.1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04856 - - cam:101511242 1095.11