Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04855 ATGGAAACAGGGGAAGATTGTTGCGTAAAAGTTGCGGTTCATGTACGGCCACTAATCGCCGACGAGAAGCTTCAAGGATGTAAAGATTGTGTCACCGTCGTCGCTGGAAAGCCTCAGGTGCAAATTGGTGCCCGTTCGTATACATTTGATCATGTCTATGGAAGCACTGGTTCTCACTCGTGTAACATGTTTGAAGAATGTGTTGCTCCACTTGTTGATGGTTTGTTCCAAGGATATAATGCTACTGTCCTTGCATATGGTCAGACAGGTTCTGGGAAAACATACACCATGGGAACTGGCTTTAAAGAAGGTTTCCAAACAGGAATAATACCCCAAGTTATGAATGTTTTGTTCAACAAAATTGAAACCTCAAAGGACCAGATTGAATTTCAATTGCATGTTTCCTTTATCGAGATTCTTAAAGAAGAAGTAAGAGATTTATTGGATTCCTGCAAACCAGAAACTGCAAATGGACATGCAGGAAAAATGGCCTCTCCAGGGAAGCCACCAATACAAATTCGTGAGACATCAAATGGGGTAATAACCCTTGCAGGATCTACCGAAGTCGGTGTCACAACACTAAAAGAAATGGCTGCTTGCCTGGAACAAGGATCCTTGAGTAGGGCAACAGGGAGCACAAATATGAACAATCAATCCAGCCGATCTCATGCCATCTTCACCATCACATTAGAGCAAATGCACAAGCCCAAGAATCCTGATGATAGCTGCTTAAATGATACTATGGATGACGAATATCTTTGTGCTAAGTTGCACTTAGTTGATCTTGCCGGATCAGAACGAGCTAAGAGAACAGGGTCTGATGGTATGCGTTTTAAAGAAGGAGTTCATATTAACAAAGGTCTTCTAGCACTTGGTAATGTTATTAGTGCACTTGGTGATGAAAAGAAACGAAAGGAAGGTGTTCATGTTCCATATAGGGACAGTAAACTTACTAGGCTTTTACAGGATTCCCTTGGGGGTAACAGCAGAACTGTCATGATAGCCTGCATAAGTCCTGCCGATATTAATGCCGAGGAAACCCTAAACACTTTAAAGTATGCAAATCGTGCACGCAATATCCAAAATAAGCCTGTTGTCAATAGAGATCCCATGTCCAGTGAGATGCTAAAAATGAGACAACAACTGGAGTGTTTGCAGGCAGAACTTTGTGCTCGTGCCGGTGGCTCATCTTTGGAAGTTCAGGGTCTTAAGGAAAGGATTGTTTGTCTTGAAGCTGCTAATGAAGATCTTTGCCGTGAACTTCACGAATACCGTAGTAGATGCTCTTTCGTAGAACAAAGTGAAAAGGATGCTTATGATAGTGGCACAGGCATTCTGAAGACGGATGGGCTTAAGAGGACCTTACCTATCACAGCGGCTGATTATCCGATGAATGAAACCGCAGGTGATTCAAGGGAAATTGAAGAAGTAGAAAAAGAATGGGAGCACAAACTTCTGCAAAATAGTATGGATAGAGAGTTGCATGAATTGAATAAACGCTTGGAGCAGAAAGAGTCTGAGATGAAGCTGTTTGGAGTATCTGATGCTGAAGTACTCAAGCAGCACTTTGGAAGGAAGATAACGGAACTTGAAGATGAGAAGAGAACAGTACAGCGAGAAAGAGATTGTCTTTTGGCTGAAGTTGAAAATCTTGCTGCCAATTCTGATGGACAAACACAGAAATTAGAGGATACCCATTCCCAAAAGTTAAAAGCCCTTGAAGCACAGATTTTGGATCTAAAGAAGAAGCAAGAGAGTCAGGTTCAGCTTATGAAGCAAAAGCAAAAAAGCGATGAAGCAGCAAAGAGGCTGCAAGATGAAATACAGTCTATAAAGGCCCAAAAGGTTCAATTGCAACAAAAGATAAAACAAGAGGCAGAGCAGTTTCGGCAGTGGAAGGCTTCTAGAGAGAAAGAACTGTTACAATTGAGGAAGGAGGGAAGAAAAAATGAATATGAAAAGCACAAGCTGCAAGCTTTAAATCAGCGCCAGAAAATGGTCCTTCAAAGAAAAACTGAAGAAGCTGCAATGGCAACCAAGAGGTTAAAGGAGTTGCTAGAAGCTCGTAAAAATTCCTCCTGCCGAGACACTTTAGTTGCAACAAATGGAAATGGATCAAATGGGCAGAGCAATGAGAAGTCCTTACAGCGGTGGCTTGATCACGAACTAGAAGTCATGGTAAAAGAACATGAAGTTCGTTTTGAGTATGAGAAACAGAGCCAAGTGCGAGCTGCCCTTGCAGAGGAACTAGCAATGCTGAAGCATGTAAATGAGTTTGCTGCTAAGGGTCTCAGTCCTCCAAGAGGAAAGAATGGATTTGCCAGGGCATCCTCCATGTCACCAAATGCAAGAATGGCGAGAATAGCTTCACTTGAGAGCATGCTGAGTATATCCTCTAATTCACTAGTAGCAATGGCTTCTCAACTTTCCGAGGCCGAAGAACGAGAGAGGGCATTCACTAATCGTGGACGTTGGAATCAGTTGCGCTCAATGGGAGAAGCCAAGAATTTGCTTCAATATATGTTTAGTTCTGTTGGAGATGCTAGGTGCCAACTCTGGGAGAAGGACATGGAGATCAGAGAAATGAAAGATCAAATTAAAGAACTTGTTGGTCTTTTGCGGCAAAGTGAGATGAAGAGAAAGGAAGCTGAGAAGGAGTCAAAAGTGAGAGAGCAAGCTGCTGGCACAACCACATTGGCTACCCCAGCTTCTGGAAATTCTCCAACTTCATTGAAACAGTATGTTGAAGATCTGAAAGGACCTCCAATGACTGTGCCAATACCAAGACAACTCAAATATACGCCAGGGATTGCCAATGGCTTAACAAGGGAATCAGCAGCATTTGTAGATCAGAGTAGAAGGATGAAACCCATTGGGCAGCTGTCAATGAAAAAACTAGCAATTGTAGGACAAGCTTCTGGCAAGTTATGGAGGTGGAAAAGAAGTCATCATCAGTGGCTACTACAATTCAAGTGGAAGTGGCAGAAACCATGGAAACTTTCCGAATGGATTCGACACAGTGATGAGACAATCATGAGAGCAAGACCGCGCTCACAGGCTTTGCCACACATGATGTGA 3078 0.4279 METGEDCCVKVAVHVRPLIADEKLQGCKDCVTVVAGKPQVQIGARSYTFDHVYGSTGSHSCNMFEECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKEGFQTGIIPQVMNVLFNKIETSKDQIEFQLHVSFIEILKEEVRDLLDSCKPETANGHAGKMASPGKPPIQIRETSNGVITLAGSTEVGVTTLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMHKPKNPDDSCLNDTMDDEYLCAKLHLVDLAGSERAKRTGSDGMRFKEGVHINKGLLALGNVISALGDEKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPVVNRDPMSSEMLKMRQQLECLQAELCARAGGSSLEVQGLKERIVCLEAANEDLCRELHEYRSRCSFVEQSEKDAYDSGTGILKTDGLKRTLPITAADYPMNETAGDSREIEEVEKEWEHKLLQNSMDRELHELNKRLEQKESEMKLFGVSDAEVLKQHFGRKITELEDEKRTVQRERDCLLAEVENLAANSDGQTQKLEDTHSQKLKALEAQILDLKKKQESQVQLMKQKQKSDEAAKRLQDEIQSIKAQKVQLQQKIKQEAEQFRQWKASREKELLQLRKEGRKNEYEKHKLQALNQRQKMVLQRKTEEAAMATKRLKELLEARKNSSCRDTLVATNGNGSNGQSNEKSLQRWLDHELEVMVKEHEVRFEYEKQSQVRAALAEELAMLKHVNEFAAKGLSPPRGKNGFARASSMSPNARMARIASLESMLSISSNSLVAMASQLSEAEERERAFTNRGRWNQLRSMGEAKNLLQYMFSSVGDARCQLWEKDMEIREMKDQIKELVGLLRQSEMKRKEAEKESKVREQAAGTTTLATPASGNSPTSLKQYVEDLKGPPMTVPIPRQLKYTPGIANGLTRESAAFVDQSRRMKPIGQLSMKKLAIVGQASGKLWRWKRSHHQWLLQFKWKWQKPWKLSEWIRHSDETIMRARPRSQALPHMM 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04855 1025 Coils Coil 487 507 - -
Trre5g04855 1025 Coils Coil 668 688 - -
Trre5g04855 1025 SMART kinesin_4 6 368 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre5g04855 1025 PRINTS Kinesin heavy chain signature 256 274 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre5g04855 1025 PRINTS Kinesin heavy chain signature 310 331 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre5g04855 1025 PRINTS Kinesin heavy chain signature 78 99 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre5g04855 1025 PRINTS Kinesin heavy chain signature 213 230 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre5g04855 1025 FunFam kinesin-like protein KIN-4A isoform X1 2 388 - -
Trre5g04855 1025 MobiDBLite consensus disorder prediction 877 891 - -
Trre5g04855 1025 Gene3D Kinesin motor domain 1 388 IPR036961 -
Trre5g04855 1025 CDD KISc_KIF4 7 361 - -
Trre5g04855 1025 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 390 IPR027417 -
Trre5g04855 1025 Coils Coil 859 886 - -
Trre5g04855 1025 ProSitePatterns Kinesin motor domain signature. 255 266 IPR019821 GO:0003777|GO:0005524|GO:0007018
Trre5g04855 1025 Coils Coil 520 554 - -
Trre5g04855 1025 Coils Coil 400 427 - -
Trre5g04855 1025 Pfam Kinesin motor domain 16 360 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre5g04855 1025 Coils Coil 563 635 - -
Trre5g04855 1025 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 1 1016 IPR027640 GO:0003777|GO:0007018
Trre5g04855 1025 MobiDBLite consensus disorder prediction 892 909 - -
Trre5g04855 1025 ProSiteProfiles Kinesin motor domain profile. 8 360 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre5g04855 1025 MobiDBLite consensus disorder prediction 877 909 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04855 Trre-Chr5 50398074 50410073 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04855 9 380 Calmodulin-binding Proteins AT5G65930 34.043 5.89e-54 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04855 - - gmx:100802585 1775.76