Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04854 ATGGAAACAGGGGAAGATTGTTGCGTAAAAGTTGCGGTTCATGTACGGCCACTAATCGCCGACGAGAAGCTTCAAGGATGTAAAGATTGTGTCACCGTCGTCGCTGGAAAGCCTCAGGTGCAAATTGGTGCCCGTTCGTATACATTTGATCATGTCTATGGAAGCACTGGTTCTCACTCGTGTAACATGTTTGAAGAATGTGTTGCTCCACTTGTTGATGGTTTGTTCCAAGGATATAATGCTACTGTCCTTGCATATGGTCAGACAGGTTCTGGGAAAACATACACCATGGGAACTGGCTTTAAAGAAGGTTTCCAAACAGGAATAATACCCCAAGTTATGAATGTTTTGTTCAACAAAATTGAAACCTCAAAGGACCAGATTGAATTTCAATTGCATGTTTCCTTTATCGAGATTCTTAAAGAAGAAGTAAGAGATTTATTGGATTCCTGCAAACCAGAAACTGCAAATGGACATGCAGGAAAAATGGCCTCTCCAGGGAAGCCACCAATACAAATTCGTGAGACATCAAATGGGGTAATAACCCTTGCAGGATCTACCGAAGTCGGTGTCACAACACTAAAAGAAATGGCTGCTTGCCTGGAACAAGGATCCTTGAGTAGGGCAACAGGGAGCACAAATATGAACAATCAATCCAGCCGATCTCATGCCATCTTCACCATCACATTAGAGCAAATGCACAAGCCCAAGAATCCTGATGATAGCTGCTTAAATGATACTATGGATGACGAATATCTTTGTGCTAAGTTGCACTTAGTTGATCTTGCCGGATCAGAACGAGCTAAGAGAACAGGGTCTGATGGTATGCGTTTTAAAGAAGGAGTTCATATTAACAAAGGTCTTCTAGCACTTGGTAATGTTATTAGTGCACTTGGTGATGAAAAGAAACGAAAGGAAGGTGTTCATGTTCCATATAGGGACAGTAAACTTACTAGGCTTTTACAGGATTCCCTTGGGGGTAACAGCAGAACTGTCATGATAGCCTGCATAAGTCCTGCCGATATTAATGCCGAGGAAACCCTAAACACTTTAAAGTATGCAAATCGTGCACGCAATATCCAAAATAAGCCTGTTGTCAATAGAGATCCCATGTCCAGTGAGATGCTAAAAATGAGACAACAACTGGAGTGTTTGCAGGCAGAACTTTGTGCTCGTGCCGGTGGCTCATCTTTGGAAGTTCAGGGTCTTAAGGAAAGGATTGTTTGTCTTGAAGCTGCTAATGAAGATCTTTGCCGTGAACTTCACGAATACCGTAGTAGATGCTCTTTCGTAGAACAAAGTGAAAAGGATGCTTATGATAGTGGCACAGGCATTCTGAAGACGGATGGGCTTAAGAGGACCTTACCTATCACAGCGGCTGATTATCCGATGAATGAAACCGCAGCAGGTGATTCAAGGGAAATTGAAGAAGTAGAAAAAGAATGGGAGCACAAACTTCTGCAAAATAGTATGGATAGAGAGTTGCATGAATTGAATAAACGCTTGGAGCAGAAAGAGTCTGAGATGAAGCTGTTTGGAGTATCTGATGCTGAAGTACTCAAGCAGCACTTTGGAAGGAAGATAACGGAACTTGAAGATGAGAAGAGAACAGTACAGCGAGAAAGAGATTGTCTTTTGGCTGAAGTTGAAAATCTTGCTGCCAATTCTGATGGACAAACACAGAAATTAGAGGATACCCATTCCCAAAAGTTAAAAGCCCTTGAAGCACAGATTTTGGATCTAAAGAAGAAGCAAGAGAGTCAGGTTCAGCTTATGAAGCAAAAGCAAAAAAGCGATGAAGCAGCAAAGAGGCTGCAAGATGAAATACAGTCTATAAAGGCCCAAAAGGTTCAATTGCAACAAAAGATAAAACAAGAGGCAGAGCAGTTTCGGCAGTGGAAGGCTTCTAGAGAGAAAGAACTGTTACAATTGAGGAAGGAGGGAAGAAAAAATGAATATGAAAAGCACAAGCTGCAAGCTTTAAATCAGCGCCAGAAAATGGTCCTTCAAAGAAAAACTGAAGAAGCTGCAATGGCAACCAAGAGGTTAAAGGAGTTGCTAGAAGCTCGTAAAAATTCCTCCTGCCGAGACACTTTAGTTGCAACAAATGGAAATGGATCAAATGGGCAGAGCAATGAGAAGTCCTTACAGCGGTGGCTTGATCACGAACTAGAAGTCATGGTAAAAGAACATGAAGTTCGTTTTGAGTATGAGAAACAGAGCCAAGTGCGAGCTGCCCTTGCAGAGGAACTAGCAATGCTGAAGCATGTAAATGAGTTTGCTGCTAAGGGTCTCAGTCCTCCAAGAGGAAAGAATGGATTTGCCAGGGCATCCTCCATGTCACCAAATGCAAGAATGGCGAGAATAGCTTCACTTGAGAGCATGCTGAGTATATCCTCTAATTCACTAGTAGCAATGGCTTCTCAACTTTCCGAGGCCGAAGAACGAGAGAGGGCATTCACTAATCGTGGACGTTGGAATCAGTTGCGCTCAATGGGAGAAGCCAAGAATTTGCTTCAATATATGTTTAGTTCTGTTGGAGATGCTAGGTGCCAACTCTGGGAGAAGGACATGGAGATCAGAGAAATGAAAGATCAAATTAAAGAACTTGTTGGTCTTTTGCGGCAAAGTGAGATGAAGAGAAAGGAAGCTGAGAAGGAGTCAAAAGTGAGAGAGCAAGCTGCTGGCACAACCACATTGGCTACCCCAGCTTCTGGAAATTCTCCAACTTCATTGAAACAGTATGTTGAAGATCTGAAAGGACCTCCAATGACTGTGCCAATACCAAGACAACTCAAATATACGCCAGGGATTGCCAATGGCTTAACAAGGGAATCAGCAGCATTTGTAGATCAGAGTAGAAGGATGAAACCCATTGGGCAGCTGTCAATGAAAAAACTAGCAATTGTAGGACAAGCTTCTGGCAAGTTATGGAGGTGGAAAAGAAGTCATCATCAGTGGCTACTACAATTCAAGTGGAAGTGGCAGAAACCATGGAAACTTTCCGAATGGATTCGACACAGTGATGAGACAATCATGAGAGCAAGACCGCGCTCACAGGCTTTGCCACACATGATGTGA 3081 0.4281 METGEDCCVKVAVHVRPLIADEKLQGCKDCVTVVAGKPQVQIGARSYTFDHVYGSTGSHSCNMFEECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKEGFQTGIIPQVMNVLFNKIETSKDQIEFQLHVSFIEILKEEVRDLLDSCKPETANGHAGKMASPGKPPIQIRETSNGVITLAGSTEVGVTTLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMHKPKNPDDSCLNDTMDDEYLCAKLHLVDLAGSERAKRTGSDGMRFKEGVHINKGLLALGNVISALGDEKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPVVNRDPMSSEMLKMRQQLECLQAELCARAGGSSLEVQGLKERIVCLEAANEDLCRELHEYRSRCSFVEQSEKDAYDSGTGILKTDGLKRTLPITAADYPMNETAAGDSREIEEVEKEWEHKLLQNSMDRELHELNKRLEQKESEMKLFGVSDAEVLKQHFGRKITELEDEKRTVQRERDCLLAEVENLAANSDGQTQKLEDTHSQKLKALEAQILDLKKKQESQVQLMKQKQKSDEAAKRLQDEIQSIKAQKVQLQQKIKQEAEQFRQWKASREKELLQLRKEGRKNEYEKHKLQALNQRQKMVLQRKTEEAAMATKRLKELLEARKNSSCRDTLVATNGNGSNGQSNEKSLQRWLDHELEVMVKEHEVRFEYEKQSQVRAALAEELAMLKHVNEFAAKGLSPPRGKNGFARASSMSPNARMARIASLESMLSISSNSLVAMASQLSEAEERERAFTNRGRWNQLRSMGEAKNLLQYMFSSVGDARCQLWEKDMEIREMKDQIKELVGLLRQSEMKRKEAEKESKVREQAAGTTTLATPASGNSPTSLKQYVEDLKGPPMTVPIPRQLKYTPGIANGLTRESAAFVDQSRRMKPIGQLSMKKLAIVGQASGKLWRWKRSHHQWLLQFKWKWQKPWKLSEWIRHSDETIMRARPRSQALPHMM 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04854 1026 MobiDBLite consensus disorder prediction 878 892 - -
Trre5g04854 1026 Coils Coil 564 636 - -
Trre5g04854 1026 SMART kinesin_4 6 368 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre5g04854 1026 FunFam kinesin-like protein KIN-4A isoform X1 2 388 - -
Trre5g04854 1026 Coils Coil 860 887 - -
Trre5g04854 1026 MobiDBLite consensus disorder prediction 893 911 - -
Trre5g04854 1026 Coils Coil 521 555 - -
Trre5g04854 1026 Gene3D Kinesin motor domain 1 388 IPR036961 -
Trre5g04854 1026 Coils Coil 669 689 - -
Trre5g04854 1026 CDD KISc_KIF4 7 361 - -
Trre5g04854 1026 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 390 IPR027417 -
Trre5g04854 1026 ProSitePatterns Kinesin motor domain signature. 255 266 IPR019821 GO:0003777|GO:0005524|GO:0007018
Trre5g04854 1026 Coils Coil 400 427 - -
Trre5g04854 1026 PRINTS Kinesin heavy chain signature 310 331 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre5g04854 1026 PRINTS Kinesin heavy chain signature 256 274 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre5g04854 1026 PRINTS Kinesin heavy chain signature 78 99 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre5g04854 1026 PRINTS Kinesin heavy chain signature 213 230 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre5g04854 1026 Pfam Kinesin motor domain 16 360 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre5g04854 1026 Coils Coil 488 508 - -
Trre5g04854 1026 MobiDBLite consensus disorder prediction 878 911 - -
Trre5g04854 1026 ProSiteProfiles Kinesin motor domain profile. 8 360 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre5g04854 1026 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 1 1017 IPR027640 GO:0003777|GO:0007018
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04854 Trre-Chr5 50398074 50410073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04854 9 380 Calmodulin-binding Proteins AT5G65930 34.043 5.57e-54 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04854 - - gmx:100802585 1771.13